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The map label for this gene is cbiD [H]

Identifier: 182680417

GI number: 182680417

Start: 3995394

End: 3996497

Strand: Reverse

Name: cbiD [H]

Synonym: Bind_3517

Alternate gene names: 182680417

Gene position: 3996497-3995394 (Counterclockwise)

Preceding gene: 182680420

Following gene: 182680416

Centisome position: 95.84

GC content: 62.77

Gene sequence:

>1104_bases
ATGGATGAAGGCGGTGAAAAATCCCCCTTGCGCAAGGGCTGGACGACGGGGGCCTGCGCGACGGCTGCGAGCCGGGCCGC
CTATGAAGCCCTGCTGACGGGCCATTTTCCCGATCCGGTCAGCATTACCCTGCCCGGTGGCCAAACCCCGGCCTTCACTC
TGGCCTTCGAGGAATGCGGTGAAGGGTTCGCCGCCGCCGGGATCATCAAGGATGCCGGCGATGATCCCGATGTGACACAT
GGTGCCCTGATCATCGCTCGGCTGCGGAAAGGTGTTTCCGGTTCGGGCATAAGCTTTCGCGCCGGTGAAGGCGTCGGGAC
GATCACGCGGCCGGGACTGCCGCTGCCGCCAGGCGAGCCCGCCATCAATCCCATGCCGCGCAAGATGATCCGCGCCGCGA
TCGAAGAGGCGGCGCAGCATTTCGGCGGAAGCACTGATATAGAGGTCGAGATTTCGGTGCCGGGCGGGGAAAAGCTCGCC
GAGCACACATTGAACCGGCGGCTTGGCATCGTCGGCGGCCTGTCGATCCTCGGCACGACCGGCATTGTTGTGCCCTATTC
CTGCTCCGCCTGGATCGATAGCATTCATCGCGGCGTGGATGTCGCGCGCGCGGCCGGCCTCGATCATATTGCCGGGGCGA
CAGGCTCGACCTCGGAAGCTGCGATCCAACGGCTCGACAATCTGCCGGATATGGCCCTGATCGAAATGGGTGATTTCGCC
GGTGGCATGCTGAAATATCTGCGCCGCCATCCGGTGGCGAAAGTGACGATCGCCGGCGGCTTCGCCAAATTGACCAAACT
CGGCCAGGGTTTTGTCGATCTCCATTCGCGCCGGGGCTCGGTGGATCTCGCCTGGCTCGCGGCGCAAGTTCCGAAGGCGA
ATTCCTCCCTGCATGAGGCGATCCGCGCTGCCAATAGTGCCAAGGAAGTTTACGAGATCGCGCAAAAGGCGGGGCTGGAT
CTCGCGGTGCCAGTAGCAGAAGCCGCTTGGCGCACGGCGGCGAAAGTGTTGCGGGGGACGGAAATCCTGCTCGATATTGC
GGTTTTCGATCGTGAAGGGGGACTGCTTGCGCGGACGGATTCGCAAATCACCAATAAATTTTGA

Upstream 100 bases:

>100_bases
ATGATGAGGCCTCGGGCGGAGTGGGGGTTGCTCAAAGCCGTTCCATTTCCTCTCGCATTCGACGACATACAGGCAATATA
GGAAAGCAAGAGACAAGGCG

Downstream 100 bases:

>100_bases
ATCAAGCTCTTTTTGAGCCAATCAATAGAAAACATTCCTGTCAAGGGGTAGCGTCACATATTTTTGGGATTTATAAAAAG
CTCCTACGGAATGATTCGGT

Product: cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MDEGGEKSPLRKGWTTGACATAASRAAYEALLTGHFPDPVSITLPGGQTPAFTLAFEECGEGFAAAGIIKDAGDDPDVTH
GALIIARLRKGVSGSGISFRAGEGVGTITRPGLPLPPGEPAINPMPRKMIRAAIEEAAQHFGGSTDIEVEISVPGGEKLA
EHTLNRRLGIVGGLSILGTTGIVVPYSCSAWIDSIHRGVDVARAAGLDHIAGATGSTSEAAIQRLDNLPDMALIEMGDFA
GGMLKYLRRHPVAKVTIAGGFAKLTKLGQGFVDLHSRRGSVDLAWLAAQVPKANSSLHEAIRAANSAKEVYEIAQKAGLD
LAVPVAEAAWRTAAKVLRGTEILLDIAVFDREGGLLARTDSQITNKF

Sequences:

>Translated_367_residues
MDEGGEKSPLRKGWTTGACATAASRAAYEALLTGHFPDPVSITLPGGQTPAFTLAFEECGEGFAAAGIIKDAGDDPDVTH
GALIIARLRKGVSGSGISFRAGEGVGTITRPGLPLPPGEPAINPMPRKMIRAAIEEAAQHFGGSTDIEVEISVPGGEKLA
EHTLNRRLGIVGGLSILGTTGIVVPYSCSAWIDSIHRGVDVARAAGLDHIAGATGSTSEAAIQRLDNLPDMALIEMGDFA
GGMLKYLRRHPVAKVTIAGGFAKLTKLGQGFVDLHSRRGSVDLAWLAAQVPKANSSLHEAIRAANSAKEVYEIAQKAGLD
LAVPVAEAAWRTAAKVLRGTEILLDIAVFDREGGLLARTDSQITNKF
>Mature_367_residues
MDEGGEKSPLRKGWTTGACATAASRAAYEALLTGHFPDPVSITLPGGQTPAFTLAFEECGEGFAAAGIIKDAGDDPDVTH
GALIIARLRKGVSGSGISFRAGEGVGTITRPGLPLPPGEPAINPMPRKMIRAAIEEAAQHFGGSTDIEVEISVPGGEKLA
EHTLNRRLGIVGGLSILGTTGIVVPYSCSAWIDSIHRGVDVARAAGLDHIAGATGSTSEAAIQRLDNLPDMALIEMGDFA
GGMLKYLRRHPVAKVTIAGGFAKLTKLGQGFVDLHSRRGSVDLAWLAAQVPKANSSLHEAIRAANSAKEVYEIAQKAGLD
LAVPVAEAAWRTAAKVLRGTEILLDIAVFDREGGLLARTDSQITNKF

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 38237; Mature: 38237

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEGGEKSPLRKGWTTGACATAASRAAYEALLTGHFPDPVSITLPGGQTPAFTLAFEECG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHC
EGFAAAGIIKDAGDDPDVTHGALIIARLRKGVSGSGISFRAGEGVGTITRPGLPLPPGEP
CCCEEHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
AINPMPRKMIRAAIEEAAQHFGGSTDIEVEISVPGGEKLAEHTLNRRLGIVGGLSILGTT
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCC
GIVVPYSCSAWIDSIHRGVDVARAAGLDHIAGATGSTSEAAIQRLDNLPDMALIEMGDFA
CEEECCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCHH
GGMLKYLRRHPVAKVTIAGGFAKLTKLGQGFVDLHSRRGSVDLAWLAAQVPKANSSLHEA
HHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHHH
IRAANSAKEVYEIAQKAGLDLAVPVAEAAWRTAAKVLRGTEILLDIAVFDREGGLLARTD
HHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHEEEEEEEEECCCCEEEECC
SQITNKF
HHHHCCC
>Mature Secondary Structure
MDEGGEKSPLRKGWTTGACATAASRAAYEALLTGHFPDPVSITLPGGQTPAFTLAFEECG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHC
EGFAAAGIIKDAGDDPDVTHGALIIARLRKGVSGSGISFRAGEGVGTITRPGLPLPPGEP
CCCEEHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
AINPMPRKMIRAAIEEAAQHFGGSTDIEVEISVPGGEKLAEHTLNRRLGIVGGLSILGTT
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCC
GIVVPYSCSAWIDSIHRGVDVARAAGLDHIAGATGSTSEAAIQRLDNLPDMALIEMGDFA
CEEECCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCHH
GGMLKYLRRHPVAKVTIAGGFAKLTKLGQGFVDLHSRRGSVDLAWLAAQVPKANSSLHEA
HHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHHH
IRAANSAKEVYEIAQKAGLDLAVPVAEAAWRTAAKVLRGTEILLDIAVFDREGGLLARTD
HHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHEEEEEEEEECCCCEEEECC
SQITNKF
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA