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The map label for this gene is ihfA [H]

Identifier: 182680278

GI number: 182680278

Start: 3831787

End: 3832164

Strand: Reverse

Name: ihfA [H]

Synonym: Bind_3378

Alternate gene names: 182680278

Gene position: 3832164-3831787 (Counterclockwise)

Preceding gene: 182680279

Following gene: 182680277

Centisome position: 91.9

GC content: 54.76

Gene sequence:

>378_bases
ATGGTAAAATCAGCAAGCTCCCAAGCGGAAAGACCGGTCGCCGTCTCCGACGATACGACGGATGGCGAGAGCCAGACCCT
GACACGTGTCAATCTCGCCGAGGCTGTCTATCGTAGCGTCGGCCTCTCGCGCAAGGAATCGGCTGCTTTGGTGCAAATGG
TTCTGAGCGAACTTTCGGATACTTTGGTCAAGGGGGAAACAGTCAAGCTTTCCTCCTTCGGTTCTTTCATCATTCGTTCC
AAGGCGGAACGAATCGGCCGTAATCCGAAAACAGGGATCGAAGTGCCGATCACCCAGCGGCGGGTTCTCGTTTTCAAACC
TTCGAACGTGCTCAAGGCCAAGGTCAACGGGCACACCGTTGTCGAAGAGGATGATTGA

Upstream 100 bases:

>100_bases
GTTGAAGGCAAGTGTTGCCTGCCCGATCTTGGGAGATATTGAGCCTATTTTCTTCGTATTATTTTCGGAAGCCTATTTTA
TAAATGTCGAGATTTCAGGA

Downstream 100 bases:

>100_bases
AACCAAGGTCGTGAGAGGGAGGCTTGATTTCTTTCTCAAATCTTCGCTTTTTGAACGCGAGAGCGAAGATTTGAGAGTGT
TCTGGCCGACCTTCTGCCTC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MVKSASSQAERPVAVSDDTTDGESQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRS
KAERIGRNPKTGIEVPITQRRVLVFKPSNVLKAKVNGHTVVEEDD

Sequences:

>Translated_125_residues
MVKSASSQAERPVAVSDDTTDGESQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRS
KAERIGRNPKTGIEVPITQRRVLVFKPSNVLKAKVNGHTVVEEDD
>Mature_125_residues
MVKSASSQAERPVAVSDDTTDGESQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRS
KAERIGRNPKTGIEVPITQRRVLVFKPSNVLKAKVNGHTVVEEDD

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=97, Percent_Identity=42.2680412371134, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13559; Mature: 13559

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSASSQAERPVAVSDDTTDGESQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSD
CCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TLVKGETVKLSSFGSFIIRSKAERIGRNPKTGIEVPITQRRVLVFKPSNVLKAKVNGHTV
HHHCCCEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCCEEEEECCCCEE
VEEDD
EECCC
>Mature Secondary Structure
MVKSASSQAERPVAVSDDTTDGESQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSD
CCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TLVKGETVKLSSFGSFIIRSKAERIGRNPKTGIEVPITQRRVLVFKPSNVLKAKVNGHTV
HHHCCCEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCCEEEEECCCCEE
VEEDD
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA