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The map label for this gene is yfkH [H]

Identifier: 182680153

GI number: 182680153

Start: 3694625

End: 3695533

Strand: Reverse

Name: yfkH [H]

Synonym: Bind_3250

Alternate gene names: 182680153

Gene position: 3695533-3694625 (Counterclockwise)

Preceding gene: 182680155

Following gene: 182680152

Centisome position: 88.62

GC content: 57.21

Gene sequence:

>909_bases
ATGGGATTTCGCCTCGCGAAAGAATGGGCCAGACTGGCCCGCCTGCCTATTCTTTCCCTATTCCTCGAGGCCTTCTATCG
GTTTGTCGAGGATGACGGCTGGGCGATTGCGAGCCATATCGCTTTGTCGGCCTTGACGTCGATGTTTCCCTTTCTGATCT
TTGTCACCGCGCTCGCGGCTTTTCTCGGCTCGCAAAATCTGCCCGAGGAGGCCGTCACCTTTCTGTTCAATACCTGGCCC
GCCGAGGTGGCGGGGCCCCTCGCGCAGGAAATCCATAATGTCTTGACTCAGGCGCGCGGTGGCCTTTTGACCCTCAGCGT
CGTGCTGGCGATCTATTTTTCCTCGAGCGGTGTCGAGGCTTTGCGCATCGCGCTCAACCGCGCTTATGACGTGAAGGATG
TGCGGCCTTGGTATCTGTTGCGTCTTGAATCCATTGTCTATGTGTTTATCGGCGCGTTCGGTCTGTTGACCTTCGCTTTA
TTGATTGTGCTCGCGCCGCTGATCTGGGAGATCATTCTGCGTTTCGCGCCCGGCATGGCACCGCTCCAGCAATATGTGAC
GGTGCTGCGCTTTTCCATCGTGACCGCGATCCTGCTCCTGGCGCTTGTCATCATGCATAAATACCTGCCGGCGGGGCGGC
GGCACCTGCGCGATATTATCGTCGGCATTTTGCTCACCTTCGTCCTCTGGATCGCCGGCGGTATGGCCTTTGGCTCCTAC
CTTGCCGAATTCGCCCGTAATTATGTGACCACTTATGCCGGTCTCGCCTCGGTGATGATCGCGCTTGTGTTCTTCTATAT
GCTGGCCTGCATCTTTATTTACGGCGGCGAATTGAATGCCGCGATCCTGCGCCATTCCCGTCGCAAACAGGCGGCGATTG
CCGCCATTATGGGAGGTGAGGGAGGTTAA

Upstream 100 bases:

>100_bases
TTAAACCCGGCCTCGAAAGCGCCGGGGTCGTTGCCAACTCGTCGCCGCGCGGAACTTCGTGACGCGTCCTTCCGTTCCCG
CATTTTGTGGTCTTGAACCA

Downstream 100 bases:

>100_bases
CCTTGATTAGACCTCGATCGTTTCTTCGATTCGGAACATGCTAAGGTTTCTCATCCCACCCTGCTTCGATACTTTCTATT
TTTAGCGAGAGTCCGTTCCA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MGFRLAKEWARLARLPILSLFLEAFYRFVEDDGWAIASHIALSALTSMFPFLIFVTALAAFLGSQNLPEEAVTFLFNTWP
AEVAGPLAQEIHNVLTQARGGLLTLSVVLAIYFSSSGVEALRIALNRAYDVKDVRPWYLLRLESIVYVFIGAFGLLTFAL
LIVLAPLIWEIILRFAPGMAPLQQYVTVLRFSIVTAILLLALVIMHKYLPAGRRHLRDIIVGILLTFVLWIAGGMAFGSY
LAEFARNYVTTYAGLASVMIALVFFYMLACIFIYGGELNAAILRHSRRKQAAIAAIMGGEGG

Sequences:

>Translated_302_residues
MGFRLAKEWARLARLPILSLFLEAFYRFVEDDGWAIASHIALSALTSMFPFLIFVTALAAFLGSQNLPEEAVTFLFNTWP
AEVAGPLAQEIHNVLTQARGGLLTLSVVLAIYFSSSGVEALRIALNRAYDVKDVRPWYLLRLESIVYVFIGAFGLLTFAL
LIVLAPLIWEIILRFAPGMAPLQQYVTVLRFSIVTAILLLALVIMHKYLPAGRRHLRDIIVGILLTFVLWIAGGMAFGSY
LAEFARNYVTTYAGLASVMIALVFFYMLACIFIYGGELNAAILRHSRRKQAAIAAIMGGEGG
>Mature_301_residues
GFRLAKEWARLARLPILSLFLEAFYRFVEDDGWAIASHIALSALTSMFPFLIFVTALAAFLGSQNLPEEAVTFLFNTWPA
EVAGPLAQEIHNVLTQARGGLLTLSVVLAIYFSSSGVEALRIALNRAYDVKDVRPWYLLRLESIVYVFIGAFGLLTFALL
IVLAPLIWEIILRFAPGMAPLQQYVTVLRFSIVTAILLLALVIMHKYLPAGRRHLRDIIVGILLTFVLWIAGGMAFGSYL
AEFARNYVTTYAGLASVMIALVFFYMLACIFIYGGELNAAILRHSRRKQAAIAAIMGGEGG

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33400; Mature: 33269

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFRLAKEWARLARLPILSLFLEAFYRFVEDDGWAIASHIALSALTSMFPFLIFVTALAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGSQNLPEEAVTFLFNTWPAEVAGPLAQEIHNVLTQARGGLLTLSVVLAIYFSSSGVEA
HHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH
LRIALNRAYDVKDVRPWYLLRLESIVYVFIGAFGLLTFALLIVLAPLIWEIILRFAPGMA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
PLQQYVTVLRFSIVTAILLLALVIMHKYLPAGRRHLRDIIVGILLTFVLWIAGGMAFGSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAEFARNYVTTYAGLASVMIALVFFYMLACIFIYGGELNAAILRHSRRKQAAIAAIMGGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
GG
CC
>Mature Secondary Structure 
GFRLAKEWARLARLPILSLFLEAFYRFVEDDGWAIASHIALSALTSMFPFLIFVTALAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH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CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]