| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
Click here to switch to the map view.
The map label for this gene is ytfP [H]
Identifier: 182680151
GI number: 182680151
Start: 3692712
End: 3693920
Strand: Reverse
Name: ytfP [H]
Synonym: Bind_3248
Alternate gene names: 182680151
Gene position: 3693920-3692712 (Counterclockwise)
Preceding gene: 182680152
Following gene: 182680149
Centisome position: 88.58
GC content: 60.79
Gene sequence:
>1209_bases ATGGCGGCCGAGACCGTCGCGCGGCAGATGAGTGGCACGGGCGTGAAAGTCACCGTTTATGATCGCATGCCGGCAGTCGG GCGCAAATTCCTCCTGGCGGGTCGCGGCGGTCTCAACCTGACCCATAGTGAAGCGCTGGACATTTTGCTGACCCGTTATG GTTCGGCCATGCCGGATCTTGCCTCAGCCATCCGGGCTTTTCCGCCGCAGGCGTTGCGGGATTGGTGTGAGGGTCTCGGA CAAGAGACTTTCGTCGGCTCCAGCGGGCGCATCTTTCCAAAATCGTTCAAGGCTTCTCCCTTGCTGCGGGCCTGGCTCGG ACGGCTGCGTTATTTAGGGGTTCAATTCGCTCTGCGGCATGAATGGCGCGGTTTTGAAAAAGAAAACGCGCTTATTTTCG CAACGCCCGAGGGGCTATTCCGCGTTGAGGCGCAAGCCTGTGTCCTGGCGCTCGGCGGAGCGAGCTGGCCCCGGCTTGGC TCGGATGGCGCCTGGGTGCCGGTTCTGGAAAAAGCGGGTCTTGCCGTCGTTCCCTTGCAGCCAGCCAATTGCGGCTTTCT TGTCCCCTGGTCGGAGCATTTTCTCGCCCGTTTCGAAGGGGCGCCTTTGAAAAATCTGCGTCTGTCTTGCCGCGATCATT TGGGGGTGGAGCAGGCAAGTCTGGGCGAAGTGACAATCACGCATACAGGTCTCGAAGGCGGTGGCCTGTATGCGCTCGGG CGTTTCTTGCGCGAAGATTTTTTGAACAATGGCGAGGCCTGGCTGACCCTGAGCTTGCGGCCTGATTTGACTGTTGAGGA GATCACCCGCCGTTTAGCCGGCCGCTCCCCTAAACAATCGCTTTCGACATTCCTGCGCAAAAGCCTGCGGCTTTCACCCG CTTCCATCGGTCTTCTCAATGAAGCCTGCGGCATGTTGGGAGAAAAGCCCGTCTCGCTAACGCCGGAACGCCTGGCCTCG CGCATCCATGCGCTGCCTCTGCGGCTCACCGGCATGGCGCCGATCGCCAAGGCGATTTCCACTGCCGGCGGCGTGGCTTT GTCCGAACTCGATGAAAATTTCATGCTGCGCCGGCGCTCGGGCCTTTTCATCGCCGGCGAAATGCTCGACTGGGAAGCCC CGACCGGAGGCTATTTGTTACAGGCTTGTTTCGCGACCGGCCGACGTGCAGGGGAGGGGGTGGTGAACTGGCTCGGGCGT ATGGCGTAA
Upstream 100 bases:
>100_bases TGCAGGCGGCGTTGACACCTTCCGCCGATACGACTCTTTGAGCGAGCCTTCCTCCAACGCGCCTGACATCGCTATCATCG GGGCTGGACCCGCTGGTCTC
Downstream 100 bases:
>100_bases GTTTATGCCCGCAAAACCGCGCCGGTCTTCTTGCCTACCTCGGTGACGATCTTGGACGCGATGGCCTCGATTTCCGCCTC GGTCAGGGTTTTTTCGCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MAAETVARQMSGTGVKVTVYDRMPAVGRKFLLAGRGGLNLTHSEALDILLTRYGSAMPDLASAIRAFPPQALRDWCEGLG QETFVGSSGRIFPKSFKASPLLRAWLGRLRYLGVQFALRHEWRGFEKENALIFATPEGLFRVEAQACVLALGGASWPRLG SDGAWVPVLEKAGLAVVPLQPANCGFLVPWSEHFLARFEGAPLKNLRLSCRDHLGVEQASLGEVTITHTGLEGGGLYALG RFLREDFLNNGEAWLTLSLRPDLTVEEITRRLAGRSPKQSLSTFLRKSLRLSPASIGLLNEACGMLGEKPVSLTPERLAS RIHALPLRLTGMAPIAKAISTAGGVALSELDENFMLRRRSGLFIAGEMLDWEAPTGGYLLQACFATGRRAGEGVVNWLGR MA
Sequences:
>Translated_402_residues MAAETVARQMSGTGVKVTVYDRMPAVGRKFLLAGRGGLNLTHSEALDILLTRYGSAMPDLASAIRAFPPQALRDWCEGLG QETFVGSSGRIFPKSFKASPLLRAWLGRLRYLGVQFALRHEWRGFEKENALIFATPEGLFRVEAQACVLALGGASWPRLG SDGAWVPVLEKAGLAVVPLQPANCGFLVPWSEHFLARFEGAPLKNLRLSCRDHLGVEQASLGEVTITHTGLEGGGLYALG RFLREDFLNNGEAWLTLSLRPDLTVEEITRRLAGRSPKQSLSTFLRKSLRLSPASIGLLNEACGMLGEKPVSLTPERLAS RIHALPLRLTGMAPIAKAISTAGGVALSELDENFMLRRRSGLFIAGEMLDWEAPTGGYLLQACFATGRRAGEGVVNWLGR MA >Mature_401_residues AAETVARQMSGTGVKVTVYDRMPAVGRKFLLAGRGGLNLTHSEALDILLTRYGSAMPDLASAIRAFPPQALRDWCEGLGQ ETFVGSSGRIFPKSFKASPLLRAWLGRLRYLGVQFALRHEWRGFEKENALIFATPEGLFRVEAQACVLALGGASWPRLGS DGAWVPVLEKAGLAVVPLQPANCGFLVPWSEHFLARFEGAPLKNLRLSCRDHLGVEQASLGEVTITHTGLEGGGLYALGR FLREDFLNNGEAWLTLSLRPDLTVEEITRRLAGRSPKQSLSTFLRKSLRLSPASIGLLNEACGMLGEKPVSLTPERLASR IHALPLRLTGMAPIAKAISTAGGVALSELDENFMLRRRSGLFIAGEMLDWEAPTGGYLLQACFATGRRAGEGVVNWLGRM A
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 43608; Mature: 43477
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAETVARQMSGTGVKVTVYDRMPAVGRKFLLAGRGGLNLTHSEALDILLTRYGSAMPDL CCHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHH ASAIRAFPPQALRDWCEGLGQETFVGSSGRIFPKSFKASPLLRAWLGRLRYLGVQFALRH HHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EWRGFEKENALIFATPEGLFRVEAQACVLALGGASWPRLGSDGAWVPVLEKAGLAVVPLQ HHCCCCCCCEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCCCEEHHHHCCCEEEEECC PANCGFLVPWSEHFLARFEGAPLKNLRLSCRDHLGVEQASLGEVTITHTGLEGGGLYALG CCCCCEECCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHH RFLREDFLNNGEAWLTLSLRPDLTVEEITRRLAGRSPKQSLSTFLRKSLRLSPASIGLLN HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH EACGMLGEKPVSLTPERLASRIHALPLRLTGMAPIAKAISTAGGVALSELDENFMLRRRS HHHHHCCCCCCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC GLFIAGEMLDWEAPTGGYLLQACFATGRRAGEGVVNWLGRMA CCEEEECEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC >Mature Secondary Structure AAETVARQMSGTGVKVTVYDRMPAVGRKFLLAGRGGLNLTHSEALDILLTRYGSAMPDL CHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHH ASAIRAFPPQALRDWCEGLGQETFVGSSGRIFPKSFKASPLLRAWLGRLRYLGVQFALRH HHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EWRGFEKENALIFATPEGLFRVEAQACVLALGGASWPRLGSDGAWVPVLEKAGLAVVPLQ HHCCCCCCCEEEEECCCCCEEEECCEEEEEECCCCCCCCCCCCCEEHHHHCCCEEEEECC PANCGFLVPWSEHFLARFEGAPLKNLRLSCRDHLGVEQASLGEVTITHTGLEGGGLYALG CCCCCEECCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHH RFLREDFLNNGEAWLTLSLRPDLTVEEITRRLAGRSPKQSLSTFLRKSLRLSPASIGLLN HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH EACGMLGEKPVSLTPERLASRIHALPLRLTGMAPIAKAISTAGGVALSELDENFMLRRRS HHHHHCCCCCCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC GLFIAGEMLDWEAPTGGYLLQACFATGRRAGEGVVNWLGRMA CCEEEECEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]