BacMap

Definition	Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome.
Accession	NC_010581
Length	4,170,153

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The map label for this gene is yqjQ [H]

Identifier: 182680147

GI number: 182680147

Start: 3688152

End: 3688940

Strand: Reverse

Name: yqjQ [H]

Synonym: Bind_3244

Alternate gene names: 182680147

Gene position: 3688940-3688152 (Counterclockwise)

Preceding gene: 182680148

Following gene: 182680146

Centisome position: 88.46

GC content: 60.2

Gene sequence:

>789_bases
ATGAGCGAGGAGCGGCGCATTGTCCTGATCACGGGGGCTTCCAGCGGCATCGGTGCGGAACTGGCGCAGATTTTCGCCCG
GGAAGGCCATGATCTCGGCCTGGTCGCCCGCCGCGAGGATCGGCTCGAGACCCTGGCCGATAAAATCGCGGCACAAGGCG
CCCCCCGGCCGCTCGTTTTTCCTTGTGATCTCGCGCAGCCTGATGCCGTTGCCTCGCTGGGAAAGGCCGTCGCGGCAGCG
GGTGCGCGCCCGATCATGCTTGTCAATAATGCGGGTTTTGGTCTCCTCGGCGAGGTTGCGACGATCGATCCCGACGCGCA
ACTCGCCATTATCGATGTCAATACACGCGCCCTTCTCGCATTAACCTTACATTTTCTGCCCCAAATCCGGGAGGCACGGG
GCAAAATCTTGAATGTCGCGTCCGTTGTGGCTTTCCTGCCCGGCGGGCCCCGTTTAGCCGTCTATTATGCCTCCAAAGCT
TTTGTTCTGTCCTTCAGTCGCTCCCTGCGTGAGGAAATGCGCGCCGATGGCGTGGAGGTTTGTGTTCTATGCCCCGGTAT
GACGCCGACGGAATTTCAGGAACGGGCTGGCTTTGGCCCAGGAATTGCTTTAGATTGGATGCCGCAGATCAGCGCGGTAC
AAGTCGCTGAAGCCGGCTATGCCGGGCTCATGACAGGACGCGGTGTCATTACACCCGGTTTCTTCAATAAATTGACCGAG
TGGCTCGCCCCGCTTCTGCCGACATCCCTGGTCCTGCCTTTGATCGGGGCCATGCAACGCAAGCGTTGA

Upstream 100 bases:

>100_bases
AACCCTGGCTGAAGGATAGGCCTGAAGAGTTCCTTGAATCCGATGGCTTCATGGGTCTGTTCGGCGGGCCGATTCGCTGT
GCCTGGACGCAGAGGTGTTT

Downstream 100 bases:

>100_bases
GGGACGAATGAGCAAGCCCTAATAAGGGGATGTCCCCCGAGAGGCGTCGAAAAAATTCGAGGCGAATATAAAAGCAAGAA
AATGGTAAATGTTTCGTGTT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSEERRIVLITGASSGIGAELAQIFAREGHDLGLVARREDRLETLADKIAAQGAPRPLVFPCDLAQPDAVASLGKAVAAA
GARPIMLVNNAGFGLLGEVATIDPDAQLAIIDVNTRALLALTLHFLPQIREARGKILNVASVVAFLPGGPRLAVYYASKA
FVLSFSRSLREEMRADGVEVCVLCPGMTPTEFQERAGFGPGIALDWMPQISAVQVAEAGYAGLMTGRGVITPGFFNKLTE
WLAPLLPTSLVLPLIGAMQRKR

Sequences:

>Translated_262_residues
MSEERRIVLITGASSGIGAELAQIFAREGHDLGLVARREDRLETLADKIAAQGAPRPLVFPCDLAQPDAVASLGKAVAAA
GARPIMLVNNAGFGLLGEVATIDPDAQLAIIDVNTRALLALTLHFLPQIREARGKILNVASVVAFLPGGPRLAVYYASKA
FVLSFSRSLREEMRADGVEVCVLCPGMTPTEFQERAGFGPGIALDWMPQISAVQVAEAGYAGLMTGRGVITPGFFNKLTE
WLAPLLPTSLVLPLIGAMQRKR
>Mature_261_residues
SEERRIVLITGASSGIGAELAQIFAREGHDLGLVARREDRLETLADKIAAQGAPRPLVFPCDLAQPDAVASLGKAVAAAG
ARPIMLVNNAGFGLLGEVATIDPDAQLAIIDVNTRALLALTLHFLPQIREARGKILNVASVVAFLPGGPRLAVYYASKAF
VLSFSRSLREEMRADGVEVCVLCPGMTPTEFQERAGFGPGIALDWMPQISAVQVAEAGYAGLMTGRGVITPGFFNKLTEW
LAPLLPTSLVLPLIGAMQRKR

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=189, Percent_Identity=30.1587301587302, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI4557649, Length=185, Percent_Identity=31.3513513513514, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI20149619, Length=267, Percent_Identity=28.4644194756554, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=32.3076923076923, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI22507405, Length=191, Percent_Identity=31.413612565445, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40254992, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40548397, Length=196, Percent_Identity=29.5918367346939, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI214010158, Length=196, Percent_Identity=29.5918367346939, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI214010156, Length=196, Percent_Identity=29.5918367346939, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI22758144, Length=196, Percent_Identity=29.5918367346939, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI150247226, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI142976729, Length=230, Percent_Identity=31.304347826087, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI38348362, Length=182, Percent_Identity=31.3186813186813, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI19743808, Length=194, Percent_Identity=31.9587628865979, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI38424085, Length=182, Percent_Identity=31.3186813186813, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI109715829, Length=198, Percent_Identity=28.2828282828283, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI40807363, Length=219, Percent_Identity=31.0502283105023, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI44680136, Length=196, Percent_Identity=29.5918367346939, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI44680133, Length=196, Percent_Identity=29.5918367346939, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI17738292, Length=196, Percent_Identity=29.5918367346939, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=27.4111675126904, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=32.1052631578947, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787820, Length=191, Percent_Identity=31.9371727748691, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787335, Length=205, Percent_Identity=28.780487804878, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=193, Percent_Identity=30.5699481865285, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789378, Length=209, Percent_Identity=28.7081339712919, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=33.160621761658, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=206, Percent_Identity=29.126213592233, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=194, Percent_Identity=31.4432989690722, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=199, Percent_Identity=29.6482412060301, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=29.3532338308458, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=202, Percent_Identity=28.7128712871287, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=207, Percent_Identity=28.0193236714976, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=30.1980198019802, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=200, Percent_Identity=28, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=201, Percent_Identity=28.3582089552239, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=206, Percent_Identity=29.126213592233, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=195, Percent_Identity=27.6923076923077, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=207, Percent_Identity=27.0531400966184, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=191, Percent_Identity=28.7958115183246, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=257, Percent_Identity=29.9610894941634, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=257, Percent_Identity=29.9610894941634, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=205, Percent_Identity=27.3170731707317, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=210, Percent_Identity=30, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=188, Percent_Identity=27.1276595744681, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=230, Percent_Identity=25.6521739130435, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561272, Length=178, Percent_Identity=30.8988764044944, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=33.6683417085427, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6319635, Length=184, Percent_Identity=31.5217391304348, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28571526, Length=197, Percent_Identity=33.502538071066, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI21357041, Length=199, Percent_Identity=33.6683417085427, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=34, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI23397609, Length=200, Percent_Identity=36.5, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24644339, Length=193, Percent_Identity=32.1243523316062, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24640442, Length=192, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI161076933, Length=190, Percent_Identity=30, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=29.5336787564767, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI116007236, Length=224, Percent_Identity=27.6785714285714, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24584744, Length=186, Percent_Identity=30.1075268817204, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28574402, Length=186, Percent_Identity=30.1075268817204, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24584752, Length=187, Percent_Identity=32.0855614973262, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24651139, Length=196, Percent_Identity=30.6122448979592, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007238, Length=176, Percent_Identity=27.8409090909091, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24649181, Length=239, Percent_Identity=26.7782426778243, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24580925, Length=203, Percent_Identity=30.0492610837438, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641388, Length=224, Percent_Identity=29.0178571428571, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27812; Mature: 27681

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEERRIVLITGASSGIGAELAQIFAREGHDLGLVARREDRLETLADKIAAQGAPRPLVF
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEE
PCDLAQPDAVASLGKAVAAAGARPIMLVNNAGFGLLGEVATIDPDAQLAIIDVNTRALLA
ECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCHHHHH
LTLHFLPQIREARGKILNVASVVAFLPGGPRLAVYYASKAFVLSFSRSLREEMRADGVEV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEE
CVLCPGMTPTEFQERAGFGPGIALDWMPQISAVQVAEAGYAGLMTGRGVITPGFFNKLTE
EEECCCCCCHHHHHHCCCCCCCEECCCCCCHHHHHHHCCCHHHCCCCCCCCCHHHHHHHH
WLAPLLPTSLVLPLIGAMQRKR
HHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEERRIVLITGASSGIGAELAQIFAREGHDLGLVARREDRLETLADKIAAQGAPRPLVF
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEE
PCDLAQPDAVASLGKAVAAAGARPIMLVNNAGFGLLGEVATIDPDAQLAIIDVNTRALLA
ECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCEEEEEECCCHHHHH
LTLHFLPQIREARGKILNVASVVAFLPGGPRLAVYYASKAFVLSFSRSLREEMRADGVEV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEE
CVLCPGMTPTEFQERAGFGPGIALDWMPQISAVQVAEAGYAGLMTGRGVITPGFFNKLTE
EEECCCCCCHHHHHHCCCCCCCEECCCCCCHHHHHHHCCCHHHCCCCCCCCCHHHHHHHH
WLAPLLPTSLVLPLIGAMQRKR
HHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]