| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is ydaD [H]
Identifier: 182679899
GI number: 182679899
Start: 3399404
End: 3400261
Strand: Reverse
Name: ydaD [H]
Synonym: Bind_2992
Alternate gene names: 182679899
Gene position: 3400261-3399404 (Counterclockwise)
Preceding gene: 182679900
Following gene: 182679898
Centisome position: 81.54
GC content: 51.28
Gene sequence:
>858_bases ATGGACGCTTATCCAAAGCCACCCTTTCCAAGGCAACATCAGGAGATGCCGGGTATAACCAAATTAATGCAGCCTTTGCC TGATCATGGCGAAATAACTTATCATGGTTCCGGCAGACTAGCAGGAAAGCGTGCGATCATTACTGGTGCAGACAGTGGGA TAGGTCGGGCGATCGCAATCGCTTATGCGCGTGAGGGCGCTGATCTTGTGCTCTCTTATTTGAATGAAGGAGAAGATGCC GAGGAAACAAAGTCCTGGGTGGCTAAGGCGGGCCGCAAGGCAGTTCTTGTCGCGGGGGATGTTCAGTATGCCAGCCATTG TCGCGGCATAGTGGCCACAGCAATGTCAGAATTGGGTGGCATCGATATTTTAGTCAATAACGCAGCACATCAGATGACCT TCACGGCGATTGAGGATATTCTCGATGAGGAATGGGAATTGACATTCAAGGTCAATCTACATGCAATGTTTTATCTTGTG AAGGCGGCTGTGCCGCATATGCTTCCGGGAAGCGCCATCATCAACACCGCTTCTATCAATGCTGATTTCCCAAATCCAAC CTTGCTGCCTTATGCGACGACGAAAGGAGCAATCCAGAATTTTACCGCAGGCCTTGCGCAATTGCTGGCTGATAAGGGTA TACGCGCCAACGCTGTCGCGCCGGGACCAATCTGGACGCCACTCATTCCTTCAACCATGCCTGAGGAGGCTGTTGAACAT TTTGGTGAATCCGTACCGATGAAACGGCCAGGGCAGCCTGCAGAGTTGGCAACAGCATATGTCATGCTCGCAGATCCATT GTCGAGCTTTGTGTCCGGTGCGACGATTGCCGTTACTGGTGGTAAGCCCTTTCTTTGA
Upstream 100 bases:
>100_bases GCTTCATCTGAAAGGTCACGTTCAACGCCTTGCTGTAGCTGTTTGGTGACCTAATCGTTTGGGCTCTTGCGCAGGTTATA TGATTTCCTAAGGATTCGTC
Downstream 100 bases:
>100_bases AATAGGAAAGATTGGAGTCGAATTAACGGACAATTCGAACCCATAAGTGCGTCTTATCATCACTTGAGAGGATTACGTCT GAATATTGATAATGAAAGAA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: GSP39 [H]
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MDAYPKPPFPRQHQEMPGITKLMQPLPDHGEITYHGSGRLAGKRAIITGADSGIGRAIAIAYAREGADLVLSYLNEGEDA EETKSWVAKAGRKAVLVAGDVQYASHCRGIVATAMSELGGIDILVNNAAHQMTFTAIEDILDEEWELTFKVNLHAMFYLV KAAVPHMLPGSAIINTASINADFPNPTLLPYATTKGAIQNFTAGLAQLLADKGIRANAVAPGPIWTPLIPSTMPEEAVEH FGESVPMKRPGQPAELATAYVMLADPLSSFVSGATIAVTGGKPFL
Sequences:
>Translated_285_residues MDAYPKPPFPRQHQEMPGITKLMQPLPDHGEITYHGSGRLAGKRAIITGADSGIGRAIAIAYAREGADLVLSYLNEGEDA EETKSWVAKAGRKAVLVAGDVQYASHCRGIVATAMSELGGIDILVNNAAHQMTFTAIEDILDEEWELTFKVNLHAMFYLV KAAVPHMLPGSAIINTASINADFPNPTLLPYATTKGAIQNFTAGLAQLLADKGIRANAVAPGPIWTPLIPSTMPEEAVEH FGESVPMKRPGQPAELATAYVMLADPLSSFVSGATIAVTGGKPFL >Mature_285_residues MDAYPKPPFPRQHQEMPGITKLMQPLPDHGEITYHGSGRLAGKRAIITGADSGIGRAIAIAYAREGADLVLSYLNEGEDA EETKSWVAKAGRKAVLVAGDVQYASHCRGIVATAMSELGGIDILVNNAAHQMTFTAIEDILDEEWELTFKVNLHAMFYLV KAAVPHMLPGSAIINTASINADFPNPTLLPYATTKGAIQNFTAGLAQLLADKGIRANAVAPGPIWTPLIPSTMPEEAVEH FGESVPMKRPGQPAELATAYVMLADPLSSFVSGATIAVTGGKPFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=34.412955465587, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI19923817, Length=274, Percent_Identity=28.1021897810219, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=28.8537549407115, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=32.258064516129, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=30.9278350515464, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=30.3501945525292, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=28.0632411067194, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=32.4175824175824, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4504505, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=29.9212598425197, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=32.1052631578947, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=32.1052631578947, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=29.8578199052133, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=27.710843373494, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI142976729, Length=215, Percent_Identity=30.2325581395349, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI40807363, Length=231, Percent_Identity=30.7359307359307, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254986, Length=141, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=37.8640776699029, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1789378, Length=276, Percent_Identity=49.2753623188406, Blast_Score=261, Evalue=5e-71, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=31.5175097276265, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=31.5573770491803, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.1983805668016, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=32.3886639676113, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=32.3651452282158, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.5789473684211, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=31.7073170731707, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=32.3770491803279, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=30.9917355371901, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=28.90625, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787545, Length=256, Percent_Identity=24.609375, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=35.4961832061069, Blast_Score=130, Evalue=9e-31, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=36.5461847389558, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=34.3396226415094, Blast_Score=124, Evalue=6e-29, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=30.6818181818182, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=34.5588235294118, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=32.5757575757576, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=30.188679245283, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=31.2267657992565, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17555706, Length=272, Percent_Identity=33.4558823529412, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=32.1285140562249, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.5301204819277, Blast_Score=108, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.5660377358491, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=31.7343173431734, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.811320754717, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.5454545454545, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.8389513108614, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=30.3149606299213, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=29.4339622641509, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=28.7878787878788, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=29.2134831460674, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.0751879699248, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538486, Length=276, Percent_Identity=29.7101449275362, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17564282, Length=225, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=26.530612244898, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=28.5185185185185, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17568967, Length=216, Percent_Identity=28.7037037037037, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203117, Length=226, Percent_Identity=29.646017699115, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193203115, Length=223, Percent_Identity=30.0448430493274, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=28.1853281853282, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=145, Percent_Identity=30.3448275862069, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17538182, Length=250, Percent_Identity=27.2, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=27.7992277992278, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558628, Length=252, Percent_Identity=26.5873015873016, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17561272, Length=172, Percent_Identity=29.0697674418605, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.4193548387097, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=29.5918367346939, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=200, Percent_Identity=29.5, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=33.201581027668, Blast_Score=120, Evalue=9e-28, Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=32.9268292682927, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=35.3413654618474, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=33.4677419354839, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=29.3172690763052, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24644337, Length=173, Percent_Identity=34.6820809248555, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI21357673, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737361, Length=227, Percent_Identity=27.7533039647577, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=27.3092369477912, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI18859837, Length=212, Percent_Identity=29.7169811320755, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24640492, Length=179, Percent_Identity=26.8156424581006, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30285; Mature: 30285
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDAYPKPPFPRQHQEMPGITKLMQPLPDHGEITYHGSGRLAGKRAIITGADSGIGRAIAI CCCCCCCCCCCCHHCCCCHHHHHHCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCEEEE AYAREGADLVLSYLNEGEDAEETKSWVAKAGRKAVLVAGDVQYASHCRGIVATAMSELGG EEHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC IDILVNNAAHQMTFTAIEDILDEEWELTFKVNLHAMFYLVKAAVPHMLPGSAIINTASIN EEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECC ADFPNPTLLPYATTKGAIQNFTAGLAQLLADKGIRANAVAPGPIWTPLIPSTMPEEAVEH CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH FGESVPMKRPGQPAELATAYVMLADPLSSFVSGATIAVTGGKPFL HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC >Mature Secondary Structure MDAYPKPPFPRQHQEMPGITKLMQPLPDHGEITYHGSGRLAGKRAIITGADSGIGRAIAI CCCCCCCCCCCCHHCCCCHHHHHHCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCEEEE AYAREGADLVLSYLNEGEDAEETKSWVAKAGRKAVLVAGDVQYASHCRGIVATAMSELGG EEHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC IDILVNNAAHQMTFTAIEDILDEEWELTFKVNLHAMFYLVKAAVPHMLPGSAIINTASIN EEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECC ADFPNPTLLPYATTKGAIQNFTAGLAQLLADKGIRANAVAPGPIWTPLIPSTMPEEAVEH CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH FGESVPMKRPGQPAELATAYVMLADPLSSFVSGATIAVTGGKPFL HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]