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The map label for this gene is lafU [H]

Identifier: 182679602

GI number: 182679602

Start: 3061787

End: 3063037

Strand: Reverse

Name: lafU [H]

Synonym: Bind_2687

Alternate gene names: 182679602

Gene position: 3063037-3061787 (Counterclockwise)

Preceding gene: 182679603

Following gene: 182679601

Centisome position: 73.45

GC content: 50.92

Gene sequence:

>1251_bases
ATGTCGGAAAATCATAATGAAATTGTCATTATCAAGCGCCGTGTGTCTCATGAGGGGGGGCATCATGGAGGTGCATGGAA
AATTGCCTTCGCCGATTTCATGACCGCTTTGATGGCTCTGTTCCTTGTCTTATGGTTGATCAATTCCGCGAATGAGAAAA
CCAAGACGTCAATCGCCCGTTATTTCAATCCGATCAAGCTCGTTGATATGACGCCGATGCAAAAGGGTTTCCGCAATCCC
TCCGAGAAGGAAGTGAAAGCCGGCGAAGCGAAGACCAAATCGTCTACCGAGGCGGAAAAGGAAAAAAATGAAGGCTCATC
TCCGGACAAGCCTGACACGGCGCAGCTGCCGCAATCGAAATTGGCAAAATATTCCGAAGATGTCCTGTTCAGAGATCCCT
ATGCAGTTCTTGCCGAAATCGCTGACAAGACACTAAACCCGCCGCTGAAAGCCCCGGCAAGCGATCTCCAGGCCAGTGAT
GCGGAAGTAGAGAATAAAGGCGCTGATGTTTACCGCGATCCTTTCGCGCCTTTGATGCCTGCTCCTTTTGCCTCAGACGA
AACGGATCCTGCCGATGTGAAGACGACGGGTATGAGCGGCGTGACGGTCGATCATGCCTCAGCCAATGCCGCACCTGTTC
ATTCGGCGTCATCTTCGTCCGTGACCAGTGAACGTCTGAATAAGATGAATGGACGAGGCGGGGAAGAGAAGAAAGGCCAA
TTGCAGAATGGGGAAACATCCTCACAGCTTTCCGTAACACCTAAGGAGGATAGCAAGGAACTGGTTGCTGAACTCAACCG
CATAAAAAGCGAACTGAACAGTGTGCAGAAAAAGATATCAGCGGCTCCATCGACTCCCATTATTGAAGTGGAAAGCACCA
GTGAAGGAGTCCTTTTGAATCTTACCGATGATGTCACTTATTCAATGTTTGCGGTGGGATCTTCGGAGCCGCAGAAGCAG
ACCGTCCAGATTATGGAAAAAGTCGCTGGCATCCTGAAGTCGCATACGGGCAATGTCATCATCAGAGGATATACGGATGG
GCGCCCCTATAAGGATGGTGTCTACGACAATTGGCGCTTGTCGACGTCGCGCGCGCTCATGGCGCAATACATGCTGATTC
GCGGGGGCCTCGATCCTAAGCGGGTTGAGCATATCGAGGGCTATGCGGATCGACATTTGAAAAATAGCGAAGATCCTAAC
GCCTCGGTCAATCGCCGGATCGAGATTTTGGTGCGGAAGGAAAAGCCATGA

Upstream 100 bases:

>100_bases
CAAATATTGACGAAGTCAGGATCACTGCCGGTAAAACCGAAGTCCAAACACAAATCCACGCATGGATTTCATGCCTGGAA
GATGCATTGGAGCATTGAAC

Downstream 100 bases:

>100_bases
GACGACAGGTTACCAACCTCCTCGCAATGGTCTTATCGTTCTGTTCTCTGTGTGAGGGAAGCATGGCGCAATCGTGGAAT
TCAGCTTCCGCGAGTCCCTC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSENHNEIVIIKRRVSHEGGHHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIARYFNPIKLVDMTPMQKGFRNP
SEKEVKAGEAKTKSSTEAEKEKNEGSSPDKPDTAQLPQSKLAKYSEDVLFRDPYAVLAEIADKTLNPPLKAPASDLQASD
AEVENKGADVYRDPFAPLMPAPFASDETDPADVKTTGMSGVTVDHASANAAPVHSASSSSVTSERLNKMNGRGGEEKKGQ
LQNGETSSQLSVTPKEDSKELVAELNRIKSELNSVQKKISAAPSTPIIEVESTSEGVLLNLTDDVTYSMFAVGSSEPQKQ
TVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRLSTSRALMAQYMLIRGGLDPKRVEHIEGYADRHLKNSEDPN
ASVNRRIEILVRKEKP

Sequences:

>Translated_416_residues
MSENHNEIVIIKRRVSHEGGHHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIARYFNPIKLVDMTPMQKGFRNP
SEKEVKAGEAKTKSSTEAEKEKNEGSSPDKPDTAQLPQSKLAKYSEDVLFRDPYAVLAEIADKTLNPPLKAPASDLQASD
AEVENKGADVYRDPFAPLMPAPFASDETDPADVKTTGMSGVTVDHASANAAPVHSASSSSVTSERLNKMNGRGGEEKKGQ
LQNGETSSQLSVTPKEDSKELVAELNRIKSELNSVQKKISAAPSTPIIEVESTSEGVLLNLTDDVTYSMFAVGSSEPQKQ
TVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRLSTSRALMAQYMLIRGGLDPKRVEHIEGYADRHLKNSEDPN
ASVNRRIEILVRKEKP
>Mature_415_residues
SENHNEIVIIKRRVSHEGGHHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIARYFNPIKLVDMTPMQKGFRNPS
EKEVKAGEAKTKSSTEAEKEKNEGSSPDKPDTAQLPQSKLAKYSEDVLFRDPYAVLAEIADKTLNPPLKAPASDLQASDA
EVENKGADVYRDPFAPLMPAPFASDETDPADVKTTGMSGVTVDHASANAAPVHSASSSSVTSERLNKMNGRGGEEKKGQL
QNGETSSQLSVTPKEDSKELVAELNRIKSELNSVQKKISAAPSTPIIEVESTSEGVLLNLTDDVTYSMFAVGSSEPQKQT
VQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRLSTSRALMAQYMLIRGGLDPKRVEHIEGYADRHLKNSEDPNA
SVNRRIEILVRKEKP

Specific function: Probable integral membrane protein required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=174, Percent_Identity=28.735632183908, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 45582; Mature: 45451

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENHNEIVIIKRRVSHEGGHHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIAR
CCCCCCEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
YFNPIKLVDMTPMQKGFRNPSEKEVKAGEAKTKSSTEAEKEKNEGSSPDKPDTAQLPQSK
HCCCEEEEECCHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCHHH
LAKYSEDVLFRDPYAVLAEIADKTLNPPLKAPASDLQASDAEVENKGADVYRDPFAPLMP
HHHHHCCCEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCC
APFASDETDPADVKTTGMSGVTVDHASANAAPVHSASSSSVTSERLNKMNGRGGEEKKGQ
CCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
LQNGETSSQLSVTPKEDSKELVAELNRIKSELNSVQKKISAAPSTPIIEVESTSEGVLLN
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE
LTDDVTYSMFAVGSSEPQKQTVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRL
ECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
STSRALMAQYMLIRGGLDPKRVEHIEGYADRHLKNSEDPNASVNRRIEILVRKEKP
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
SENHNEIVIIKRRVSHEGGHHGGAWKIAFADFMTALMALFLVLWLINSANEKTKTSIAR
CCCCCEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
YFNPIKLVDMTPMQKGFRNPSEKEVKAGEAKTKSSTEAEKEKNEGSSPDKPDTAQLPQSK
HCCCEEEEECCHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCHHH
LAKYSEDVLFRDPYAVLAEIADKTLNPPLKAPASDLQASDAEVENKGADVYRDPFAPLMP
HHHHHCCCEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCC
APFASDETDPADVKTTGMSGVTVDHASANAAPVHSASSSSVTSERLNKMNGRGGEEKKGQ
CCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
LQNGETSSQLSVTPKEDSKELVAELNRIKSELNSVQKKISAAPSTPIIEVESTSEGVLLN
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE
LTDDVTYSMFAVGSSEPQKQTVQIMEKVAGILKSHTGNVIIRGYTDGRPYKDGVYDNWRL
ECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
STSRALMAQYMLIRGGLDPKRVEHIEGYADRHLKNSEDPNASVNRRIEILVRKEKP
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12620739; 8501040 [H]