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The map label for this gene is yfdE [H]

Identifier: 182679481

GI number: 182679481

Start: 2892101

End: 2893285

Strand: Reverse

Name: yfdE [H]

Synonym: Bind_2536

Alternate gene names: 182679481

Gene position: 2893285-2892101 (Counterclockwise)

Preceding gene: 182679485

Following gene: 182679480

Centisome position: 69.38

GC content: 62.03

Gene sequence:

>1185_bases
ATGGCGACAGTCCGTCCCAGACCACTCGACGGCATCACCGTCGTCACTTTGGAGCATGCGATCGCAGCTCCTTTCGCAAC
CCGCCAGCTTGCCGATCTGGGCGCGCGCGTCATCAAGGTGGAACGTCCTGATGGCGGCGACTTCGCGCGTGGCTACGACA
AGCGCGTTCGTGGCAAACTCGCTTCGCACTTCGCTTGGTGCAACCGCTCTAAAGAAAGCGTGGCGGTCGATTTGAAGACG
CCACAGGGGCTCGAGGTTCTGCACGCTCTCGTTGAGCGAGCTGACGTCCTGGTTCAAAATCTCGCACCTGGCGCAGCTCT
GCGGCTCGGCCTGGATCCTGACAAGCTACGGGCCGCAAACCCTCGCCTGATCCTCTGCGACATCTCTGGCTTTGGTCCGG
GAGGACCATACAGCATACGCAAAGCTTACGACCTGCTTATTCAGGCCGAAGCGGGCCTCCTGTCCATCACCGGCACTTCT
GACACGATGGCCAAGGTCGGCATCTCGATCGCGGACATTGCGACCGGCATGTACGCCTTCACCTCCATTCTCGCATCGCT
GCACCTGCGCGACCGCACGGGCCAAGGTGGTCACATCGAGGTATCGATGCTCGAGGCGCTCGGCGAATGGATGGGCTATC
CGCTCTATTATACCTTTGATGGCGCGGAGCCTCCGCCACGCACCGGGGCATCGCACGCGACCATCTATCCCTACGGACCT
TTCCCGACCGGCGATGGCGGTACCGTCCTGTTCGGCCTGCAGAACGAGCGCGAGTGGGCGGCCTTCGTCGCTAAGGTGCT
TGAGCAACCGGACCTCGTTACCGACCCGCGCTTTGCCTCTAACGGCGACCGCTCGGCCAATCGGGACGCTCTTTGCAGCA
TCATCGTCAGCACCTTCGCGTCGATGTCCCGCGAGGAGGTCATGCGCCGCCTGGAACAGGCTGACATCGCAAATGCGAGC
GTCAACGAAATGACTTCGGTCTGGACCCATCCACAGCTGAAGGTGCGCCAACGCTGGCAAGATGTCGGCAGCGAAGTCGG
GCCTATCCCTGCTTTGTTGCCTCCTACCGGCTCCGACGCCTTCGATCCCCGTATGGATCCGGTGCCCGCGCTCGGCGAGC
ACACAGATGCGATTTTGGAAGAGCTCGGCCTAAGCGCATCCGGCAAAACACGGCTCTACGCCTGA

Upstream 100 bases:

>100_bases
TTCGTCAACGACGAAGGATATCTCAAAGAGAAGCGACTTTCCAACAGTTTGAAGCGCCCTATCCTACGCTAATACCGTAG
TCAACACAGGAGAGGGTGCG

Downstream 100 bases:

>100_bases
TCAGATTCCCGGCCGCAAAACAGAACAAGCCAGACATGGAGGAATTGCCTATGGTTACCGATGTGAGTGAAACAGCCAGC
AAGCGTATCGAACGTCGTGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MATVRPRPLDGITVVTLEHAIAAPFATRQLADLGARVIKVERPDGGDFARGYDKRVRGKLASHFAWCNRSKESVAVDLKT
PQGLEVLHALVERADVLVQNLAPGAALRLGLDPDKLRAANPRLILCDISGFGPGGPYSIRKAYDLLIQAEAGLLSITGTS
DTMAKVGISIADIATGMYAFTSILASLHLRDRTGQGGHIEVSMLEALGEWMGYPLYYTFDGAEPPPRTGASHATIYPYGP
FPTGDGGTVLFGLQNEREWAAFVAKVLEQPDLVTDPRFASNGDRSANRDALCSIIVSTFASMSREEVMRRLEQADIANAS
VNEMTSVWTHPQLKVRQRWQDVGSEVGPIPALLPPTGSDAFDPRMDPVPALGEHTDAILEELGLSASGKTRLYA

Sequences:

>Translated_394_residues
MATVRPRPLDGITVVTLEHAIAAPFATRQLADLGARVIKVERPDGGDFARGYDKRVRGKLASHFAWCNRSKESVAVDLKT
PQGLEVLHALVERADVLVQNLAPGAALRLGLDPDKLRAANPRLILCDISGFGPGGPYSIRKAYDLLIQAEAGLLSITGTS
DTMAKVGISIADIATGMYAFTSILASLHLRDRTGQGGHIEVSMLEALGEWMGYPLYYTFDGAEPPPRTGASHATIYPYGP
FPTGDGGTVLFGLQNEREWAAFVAKVLEQPDLVTDPRFASNGDRSANRDALCSIIVSTFASMSREEVMRRLEQADIANAS
VNEMTSVWTHPQLKVRQRWQDVGSEVGPIPALLPPTGSDAFDPRMDPVPALGEHTDAILEELGLSASGKTRLYA
>Mature_393_residues
ATVRPRPLDGITVVTLEHAIAAPFATRQLADLGARVIKVERPDGGDFARGYDKRVRGKLASHFAWCNRSKESVAVDLKTP
QGLEVLHALVERADVLVQNLAPGAALRLGLDPDKLRAANPRLILCDISGFGPGGPYSIRKAYDLLIQAEAGLLSITGTSD
TMAKVGISIADIATGMYAFTSILASLHLRDRTGQGGHIEVSMLEALGEWMGYPLYYTFDGAEPPPRTGASHATIYPYGPF
PTGDGGTVLFGLQNEREWAAFVAKVLEQPDLVTDPRFASNGDRSANRDALCSIIVSTFASMSREEVMRRLEQADIANASV
NEMTSVWTHPQLKVRQRWQDVGSEVGPIPALLPPTGSDAFDPRMDPVPALGEHTDAILEELGLSASGKTRLYA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=379, Percent_Identity=32.1899736147757, Blast_Score=209, Evalue=5e-54,
Organism=Homo sapiens, GI300863124, Length=327, Percent_Identity=33.0275229357798, Blast_Score=201, Evalue=8e-52,
Organism=Homo sapiens, GI13376042, Length=327, Percent_Identity=29.9694189602446, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI300863126, Length=378, Percent_Identity=29.6296296296296, Blast_Score=165, Evalue=6e-41,
Organism=Homo sapiens, GI266456254, Length=386, Percent_Identity=29.5336787564767, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI42794625, Length=386, Percent_Identity=29.5336787564767, Blast_Score=112, Evalue=8e-25,
Organism=Homo sapiens, GI266458393, Length=200, Percent_Identity=36, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458397, Length=200, Percent_Identity=36, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458395, Length=157, Percent_Identity=35.031847133758, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI42822893, Length=157, Percent_Identity=35.031847133758, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI87082093, Length=377, Percent_Identity=31.8302387267904, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1788717, Length=402, Percent_Identity=30.8457711442786, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1786222, Length=393, Percent_Identity=25.9541984732824, Blast_Score=88, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=338, Percent_Identity=25.4437869822485, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=215, Percent_Identity=28.8372093023256, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648431, Length=385, Percent_Identity=35.5844155844156, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI24585488, Length=352, Percent_Identity=26.1363636363636, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42472; Mature: 42341

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVRPRPLDGITVVTLEHAIAAPFATRQLADLGARVIKVERPDGGDFARGYDKRVRGKL
CCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
ASHFAWCNRSKESVAVDLKTPQGLEVLHALVERADVLVQNLAPGAALRLGLDPDKLRAAN
HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCC
PRLILCDISGFGPGGPYSIRKAYDLLIQAEAGLLSITGTSDTMAKVGISIADIATGMYAF
CCEEEEECCCCCCCCCHHHHHHHHHHEEECCCEEEEECCCHHHHHHCCHHHHHHHHHHHH
TSILASLHLRDRTGQGGHIEVSMLEALGEWMGYPLYYTFDGAEPPPRTGASHATIYPYGP
HHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCC
FPTGDGGTVLFGLQNEREWAAFVAKVLEQPDLVTDPRFASNGDRSANRDALCSIIVSTFA
CCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SMSREEVMRRLEQADIANASVNEMTSVWTHPQLKVRQRWQDVGSEVGPIPALLPPTGSDA
HCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCHHCCCCCEECCCCCCCC
FDPRMDPVPALGEHTDAILEELGLSASGKTRLYA
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ATVRPRPLDGITVVTLEHAIAAPFATRQLADLGARVIKVERPDGGDFARGYDKRVRGKL
CCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
ASHFAWCNRSKESVAVDLKTPQGLEVLHALVERADVLVQNLAPGAALRLGLDPDKLRAAN
HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCC
PRLILCDISGFGPGGPYSIRKAYDLLIQAEAGLLSITGTSDTMAKVGISIADIATGMYAF
CCEEEEECCCCCCCCCHHHHHHHHHHEEECCCEEEEECCCHHHHHHCCHHHHHHHHHHHH
TSILASLHLRDRTGQGGHIEVSMLEALGEWMGYPLYYTFDGAEPPPRTGASHATIYPYGP
HHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCC
FPTGDGGTVLFGLQNEREWAAFVAKVLEQPDLVTDPRFASNGDRSANRDALCSIIVSTFA
CCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SMSREEVMRRLEQADIANASVNEMTSVWTHPQLKVRQRWQDVGSEVGPIPALLPPTGSDA
HCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCHHCCCCCEECCCCCCCC
FDPRMDPVPALGEHTDAILEELGLSASGKTRLYA
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]