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The map label for this gene is yncD [C]

Identifier: 182679334

GI number: 182679334

Start: 2718592

End: 2720940

Strand: Reverse

Name: yncD [C]

Synonym: Bind_2380

Alternate gene names: 182679334

Gene position: 2720940-2718592 (Counterclockwise)

Preceding gene: 182679335

Following gene: 182679328

Centisome position: 65.25

GC content: 54.15

Gene sequence:

>2349_bases
ATGGTACCCACTTCACGCGGGCCGACGCGCAATCGCGCCTTGGTTCTCCATATTCCTGTTACTTTGCTAGCCTCGGCGAG
TTCGTTCTTCTCGACTCCGGCCACAGCGCAAGAGCCTGTGGAATTGCAGGATATCGTCGTCACCGCCGATCATCCCTCGC
TTGCCTCGGCCGCGGTTCCGCCGATCAAGCAAAAATATCAGCTGCCACAGACATCGCAGAGCGCCACGGCTGCAACCATC
GCGGAAAAGATCAACATCATCGATACGGAAGATTCGGTGAAATATTTTCCCAGTCTCTTCGTGCGCAAACGCAATTACGG
TGACACGCAGCCGACGCTCGCGACGCGCACCTGGGGTGTCAATTCCAGCGCCCGCAGTCTCGTCTATGCCGATGATCTCC
TTCTCTCGGCTCTCATCGCCAATAATAATACGCTGGGCGCGCCCCGCTGGGGTCTCGTCTCACCCGAAGCGATCGACCGC
GTTGATTTTCTCTATGGTCCCTTTGCCGCCGCCTATCCAGGGAATTCCATGGGCGGCGTTTTGCAGATCACGACGCGCAT
GCCCGATAAGCCGATCGCGGTCCTGAGTCAGAACGAAGCGTTCCAGACTTTCAACCGCTATGGCACGAAAGATACCTATC
GGACCGATCAAACCAATGTCGTGATTGGCAATAGAAGCGGTGATTTTTCCTGGTTCATCACCGGCAATTATCAAAACAGC
TATAGCCAGCCGCTTTCTTTCATCACCAGCGCGACATTTCCAAAAAATACAACGGGCGGCTTTGCCGCCTTGAACAAGCT
TGGCGCACCGGCCAATGTCCTTGGCGCCGGTGGATTGTTGCATAGCGAGATGGCCAATATTTCCGGCAAATTCGCTTATG
ATATTACGTCCTGGCTACAAATGACCTATCAGATTGGCTTCTGGTCCAATCATACCAATTCATCCGTCCAGACCTATCTG
CGTGATGATACCGGGGCTGCGACATTCGCGGGTCAGTCAAGTTTCGCGAACAATAATTATACATTGACGGAACAGCATCT
GAGCAATGCCCTCTCGTTCAAGACGCATACAGGTGGTGTCTTCGATTGGGATTTGTCAGTCTCCAATTATTATTTTCTGT
ATGATAGTCAGAAAAGCCCCTATGGCGTGACGGCGACGGGCGCTGGGTTTACAACCAATGGCAAGATCGCGCGGCTCGAT
GGCACGAATTGGATCAATGGCGATTTCAATGGCATCTGGCGGCCTATGGGGCCGGGCAGCGAGCATGAGATCAGCTTCGG
CCTGCATGCCGATCGTTATTTTCTGACCAATCCAACTTATGCCAGCTCGGTTTGGAACAGCGATGCGGAATCGAGCAATT
CCCTTTATACGAACAGCCGTGGAACCACTGTCACCAAGGCCATCTGGGCGCAAGATGCCTGGCGCCTCGCGCAGAATGTC
AAATTCACGCTCGGCGGACGCCTGGAGCAATGGCAGGCTTTCGGCGGTTTGAATCTCGCGACCAATGCGACGAGTGCCGG
TGTCATCACCAGTACGACTATCCAGAATCAGCCGAGTCTGGATGCCGTGCGCTTCTCGCCCAAGGTGTCGCTCAACTGGG
CGCCCTCGGCCGAATGGGACATTACAGGCTCCTTTGGCCAAGCCTATCGTTTTCCGACCGTGACGGAACTTTATCAGATT
GTCGCGACGGGTGCGACTTTTTCGGTGCCCAACCCTGATTTACGGCCGGAGAATGTGCTGAGTGAGGAACTGGCCATCGT
GCGGAAGTTCGACTCTGGCCACGTGCGTCTCTCATTGTTCAATGAGAATGTCTCCGACGCCATCATCGCTCAGACCAGCT
TTCTAGGTGTCAGCCAAACGCCCACCACTTTCACGATGAATGTGGATGCCATCCGCAATAGCGGCGTGGAATTGGCGGCG
CAGAAGGATCATTTCATTTTTGATGAGGTCGATGCCTTCGGCAGCGTGACTTATGTCGATTCCCGCATTCTCCAGGACGC
GGGCTGGGCCAGTTCCACCGGCACGACAGTTGTCGGCAAACATGTGCCCTATGTACCCGATTGGCGTGTGACAGCTGGTG
TCACTTATCATCCGACGCCAAACTGGGCGCTGACCGCTGCCATGCGCTATAGCGGCAAGCAATATTCAACGCTGGATAAT
ACCGATGTCGTTCCCCAGGTGTTCGGCGCCTTCGACAGTTTCATCGTGGCCGATGTGCGTGCCCAATATAAACTGAGTGA
TCAGACCTGGATCAATCTCGGGATCGATAATATCAATAATGATAAATATACGCTTTATCATCCCTTTCCGGGGAGGACGT
TTACCTTTGGAGCGCGCGTGCAGTTTTAA

Upstream 100 bases:

>100_bases
GCTTGACGCACATGAGCCTGCAAGCCGGATCGCGCCTGCCTCTTTCTTTCTTTCTTATAGCGAGAGCTGACGCCTTCGCG
CGCTCCGCCGGAATTCCGTC

Downstream 100 bases:

>100_bases
GCCTCTGCTGCAAACAAACAGACGCCTGTTTGTTTGCAGCCTTGTTCACGGCTTTCGCTGAAAACCTGTCAGAGTTTCTT
GATCGCGCTCTCGATGAGGG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; Nb-Dependent Receptor; NB-Dependent Siderophore Receptor; NB Dependent Receptor; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; Ferric Siderophore Receptor; Outer Membrane Receptor; NB-Dependent Receptor Plug Domain-Containing; Ferrisiderophore Receptor Protein; Iron Compound nB-Dependent Receptor; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein

Number of amino acids: Translated: 782; Mature: 782

Protein sequence:

>782_residues
MVPTSRGPTRNRALVLHIPVTLLASASSFFSTPATAQEPVELQDIVVTADHPSLASAAVPPIKQKYQLPQTSQSATAATI
AEKINIIDTEDSVKYFPSLFVRKRNYGDTQPTLATRTWGVNSSARSLVYADDLLLSALIANNNTLGAPRWGLVSPEAIDR
VDFLYGPFAAAYPGNSMGGVLQITTRMPDKPIAVLSQNEAFQTFNRYGTKDTYRTDQTNVVIGNRSGDFSWFITGNYQNS
YSQPLSFITSATFPKNTTGGFAALNKLGAPANVLGAGGLLHSEMANISGKFAYDITSWLQMTYQIGFWSNHTNSSVQTYL
RDDTGAATFAGQSSFANNNYTLTEQHLSNALSFKTHTGGVFDWDLSVSNYYFLYDSQKSPYGVTATGAGFTTNGKIARLD
GTNWINGDFNGIWRPMGPGSEHEISFGLHADRYFLTNPTYASSVWNSDAESSNSLYTNSRGTTVTKAIWAQDAWRLAQNV
KFTLGGRLEQWQAFGGLNLATNATSAGVITSTTIQNQPSLDAVRFSPKVSLNWAPSAEWDITGSFGQAYRFPTVTELYQI
VATGATFSVPNPDLRPENVLSEELAIVRKFDSGHVRLSLFNENVSDAIIAQTSFLGVSQTPTTFTMNVDAIRNSGVELAA
QKDHFIFDEVDAFGSVTYVDSRILQDAGWASSTGTTVVGKHVPYVPDWRVTAGVTYHPTPNWALTAAMRYSGKQYSTLDN
TDVVPQVFGAFDSFIVADVRAQYKLSDQTWINLGIDNINNDKYTLYHPFPGRTFTFGARVQF

Sequences:

>Translated_782_residues
MVPTSRGPTRNRALVLHIPVTLLASASSFFSTPATAQEPVELQDIVVTADHPSLASAAVPPIKQKYQLPQTSQSATAATI
AEKINIIDTEDSVKYFPSLFVRKRNYGDTQPTLATRTWGVNSSARSLVYADDLLLSALIANNNTLGAPRWGLVSPEAIDR
VDFLYGPFAAAYPGNSMGGVLQITTRMPDKPIAVLSQNEAFQTFNRYGTKDTYRTDQTNVVIGNRSGDFSWFITGNYQNS
YSQPLSFITSATFPKNTTGGFAALNKLGAPANVLGAGGLLHSEMANISGKFAYDITSWLQMTYQIGFWSNHTNSSVQTYL
RDDTGAATFAGQSSFANNNYTLTEQHLSNALSFKTHTGGVFDWDLSVSNYYFLYDSQKSPYGVTATGAGFTTNGKIARLD
GTNWINGDFNGIWRPMGPGSEHEISFGLHADRYFLTNPTYASSVWNSDAESSNSLYTNSRGTTVTKAIWAQDAWRLAQNV
KFTLGGRLEQWQAFGGLNLATNATSAGVITSTTIQNQPSLDAVRFSPKVSLNWAPSAEWDITGSFGQAYRFPTVTELYQI
VATGATFSVPNPDLRPENVLSEELAIVRKFDSGHVRLSLFNENVSDAIIAQTSFLGVSQTPTTFTMNVDAIRNSGVELAA
QKDHFIFDEVDAFGSVTYVDSRILQDAGWASSTGTTVVGKHVPYVPDWRVTAGVTYHPTPNWALTAAMRYSGKQYSTLDN
TDVVPQVFGAFDSFIVADVRAQYKLSDQTWINLGIDNINNDKYTLYHPFPGRTFTFGARVQF
>Mature_782_residues
MVPTSRGPTRNRALVLHIPVTLLASASSFFSTPATAQEPVELQDIVVTADHPSLASAAVPPIKQKYQLPQTSQSATAATI
AEKINIIDTEDSVKYFPSLFVRKRNYGDTQPTLATRTWGVNSSARSLVYADDLLLSALIANNNTLGAPRWGLVSPEAIDR
VDFLYGPFAAAYPGNSMGGVLQITTRMPDKPIAVLSQNEAFQTFNRYGTKDTYRTDQTNVVIGNRSGDFSWFITGNYQNS
YSQPLSFITSATFPKNTTGGFAALNKLGAPANVLGAGGLLHSEMANISGKFAYDITSWLQMTYQIGFWSNHTNSSVQTYL
RDDTGAATFAGQSSFANNNYTLTEQHLSNALSFKTHTGGVFDWDLSVSNYYFLYDSQKSPYGVTATGAGFTTNGKIARLD
GTNWINGDFNGIWRPMGPGSEHEISFGLHADRYFLTNPTYASSVWNSDAESSNSLYTNSRGTTVTKAIWAQDAWRLAQNV
KFTLGGRLEQWQAFGGLNLATNATSAGVITSTTIQNQPSLDAVRFSPKVSLNWAPSAEWDITGSFGQAYRFPTVTELYQI
VATGATFSVPNPDLRPENVLSEELAIVRKFDSGHVRLSLFNENVSDAIIAQTSFLGVSQTPTTFTMNVDAIRNSGVELAA
QKDHFIFDEVDAFGSVTYVDSRILQDAGWASSTGTTVVGKHVPYVPDWRVTAGVTYHPTPNWALTAAMRYSGKQYSTLDN
TDVVPQVFGAFDSFIVADVRAQYKLSDQTWINLGIDNINNDKYTLYHPFPGRTFTFGARVQF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85534; Mature: 85534

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPTSRGPTRNRALVLHIPVTLLASASSFFSTPATAQEPVELQDIVVTADHPSLASAAVP
CCCCCCCCCCCCEEEEEECHHHHHCCHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHCCC
PIKQKYQLPQTSQSATAATIAEKINIIDTEDSVKYFPSLFVRKRNYGDTQPTLATRTWGV
CHHHHCCCCCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHEEECCCCCCCCCEEEEECCC
NSSARSLVYADDLLLSALIANNNTLGAPRWGLVSPEAIDRVDFLYGPFAAAYPGNSMGGV
CCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCE
LQITTRMPDKPIAVLSQNEAFQTFNRYGTKDTYRTDQTNVVIGNRSGDFSWFITGNYQNS
EEEEECCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCC
YSQPLSFITSATFPKNTTGGFAALNKLGAPANVLGAGGLLHSEMANISGKFAYDITSWLQ
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHCCCCHHHHHHHCCCCEEEEHHHHHHE
MTYQIGFWSNHTNSSVQTYLRDDTGAATFAGQSSFANNNYTLTEQHLSNALSFKTHTGGV
EEEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCEEEEHHHHHHHHEEEECCCCE
FDWDLSVSNYYFLYDSQKSPYGVTATGAGFTTNGKIARLDGTNWINGDFNGIWRPMGPGS
EEEEECCCEEEEEEECCCCCCCEEEECCCEECCCEEEEECCCCEECCCCCCEECCCCCCC
EHEISFGLHADRYFLTNPTYASSVWNSDAESSNSLYTNSRGTTVTKAIWAQDAWRLAQNV
CCEEEEEEECCEEEEECCCHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHCC
KFTLGGRLEQWQAFGGLNLATNATSAGVITSTTIQNQPSLDAVRFSPKVSLNWAPSAEWD
EEEECCCHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCCCEEEECCEEEEEECCCCCEE
ITGSFGQAYRFPTVTELYQIVATGATFSVPNPDLRPENVLSEELAIVRKFDSGHVRLSLF
EECCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHEEEECCCEEEEEEE
NENVSDAIIAQTSFLGVSQTPTTFTMNVDAIRNSGVELAAQKDHFIFDEVDAFGSVTYVD
CCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHCCCEEEEECCCCEEEECHHHCCCEEEHH
SRILQDAGWASSTGTTVVGKHVPYVPDWRVTAGVTYHPTPNWALTAAMRYSGKQYSTLDN
HHHHHCCCCCCCCCCEEEECCCCCCCCCEEEECEEECCCCCCEEEEEEHHCCCCCCCCCC
TDVVPQVFGAFDSFIVADVRAQYKLSDQTWINLGIDNINNDKYTLYHPFPGRTFTFGARV
CCCHHHHHHHHHHHEEEEEEEEEEECCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEEE
QF
CC
>Mature Secondary Structure
MVPTSRGPTRNRALVLHIPVTLLASASSFFSTPATAQEPVELQDIVVTADHPSLASAAVP
CCCCCCCCCCCCEEEEEECHHHHHCCHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHCCC
PIKQKYQLPQTSQSATAATIAEKINIIDTEDSVKYFPSLFVRKRNYGDTQPTLATRTWGV
CHHHHCCCCCCCCCHHHHHHHHHEEEEECCCHHHHHHHHHEEECCCCCCCCCEEEEECCC
NSSARSLVYADDLLLSALIANNNTLGAPRWGLVSPEAIDRVDFLYGPFAAAYPGNSMGGV
CCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCE
LQITTRMPDKPIAVLSQNEAFQTFNRYGTKDTYRTDQTNVVIGNRSGDFSWFITGNYQNS
EEEEECCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCC
YSQPLSFITSATFPKNTTGGFAALNKLGAPANVLGAGGLLHSEMANISGKFAYDITSWLQ
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHCCCCHHHHHHHCCCCEEEEHHHHHHE
MTYQIGFWSNHTNSSVQTYLRDDTGAATFAGQSSFANNNYTLTEQHLSNALSFKTHTGGV
EEEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCCCCEEEEHHHHHHHHEEEECCCCE
FDWDLSVSNYYFLYDSQKSPYGVTATGAGFTTNGKIARLDGTNWINGDFNGIWRPMGPGS
EEEEECCCEEEEEEECCCCCCCEEEECCCEECCCEEEEECCCCEECCCCCCEECCCCCCC
EHEISFGLHADRYFLTNPTYASSVWNSDAESSNSLYTNSRGTTVTKAIWAQDAWRLAQNV
CCEEEEEEECCEEEEECCCHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHCC
KFTLGGRLEQWQAFGGLNLATNATSAGVITSTTIQNQPSLDAVRFSPKVSLNWAPSAEWD
EEEECCCHHHHHHCCCCEEECCCCCCCEEEEEEECCCCCCCEEEECCEEEEEECCCCCEE
ITGSFGQAYRFPTVTELYQIVATGATFSVPNPDLRPENVLSEELAIVRKFDSGHVRLSLF
EECCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHEEEECCCEEEEEEE
NENVSDAIIAQTSFLGVSQTPTTFTMNVDAIRNSGVELAAQKDHFIFDEVDAFGSVTYVD
CCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHCCCEEEEECCCCEEEECHHHCCCEEEHH
SRILQDAGWASSTGTTVVGKHVPYVPDWRVTAGVTYHPTPNWALTAAMRYSGKQYSTLDN
HHHHHCCCCCCCCCCEEEECCCCCCCCCEEEECEEECCCCCCEEEEEEHHCCCCCCCCCC
TDVVPQVFGAFDSFIVADVRAQYKLSDQTWINLGIDNINNDKYTLYHPFPGRTFTFGARV
CCCHHHHHHHHHHHEEEEEEEEEEECCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEEE
QF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA