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The map label for this gene is ybaO [H]

Identifier: 182679020

GI number: 182679020

Start: 2348471

End: 2348947

Strand: Direct

Name: ybaO [H]

Synonym: Bind_2055

Alternate gene names: 182679020

Gene position: 2348471-2348947 (Clockwise)

Preceding gene: 182679012

Following gene: 182679021

Centisome position: 56.32

GC content: 53.25

Gene sequence:

>477_bases
ATGAGCGAACCGAGACTTATGGATACGATCGACAAGCGTATCTTGCGCTTGGTCCAGAAGGATGCTTCGCTTTCAATCAG
CGAGATCGCCACACAGGTCGGTTTGTCGCAGACACCTTGCTGGAAGCGGCTCCAGAAGCTCGAATCATCGGGTGTCATCA
AGCGGCGGATCGCTTTGCTCGATCCGGTGAAGCTCGGATTGCAGATGACGGTCTTCGTGTCGATCGAGGTCGGTGATCAT
TCCGAACAAGGTCTTGACCATTTCGCCGAAGAAGTGGCGCAAATGGAAGAAGTCATGGATTTCTACCGCATGGCCGGTGA
TATCGATTATCTTCTGCGCGTCGTCGTGCCGGATACCGCTGCCTTCGATGCTTTCTACAAACGCCTGATCGGGCTTGTTT
CCTTGAAGAAAGTCACGTCGCGCATCGCTCTTGAAGGCATCAAAACGGAAACCGCCTTGCCGATTTCGGCGAGTTAA

Upstream 100 bases:

>100_bases
TATCTACTTTAACCCGGCTTGTCGAGCGCTCCCGGGAGAGAAAGTGTCGGCTTCTCCCCCCGGACGATCGAGGCCATCCC
CCGCTGGCAGGACCATTCAG

Downstream 100 bases:

>100_bases
GCGGCTCTGCAAGACCTCGAACGAAAGAGAAAGGCGAGTGGAGGACCTTTTGAGCCGCAGCTATTGCCTTTCCTCCGCTT
TGCCTCGCCTGTCAGTGGAA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSEPRLMDTIDKRILRLVQKDASLSISEIATQVGLSQTPCWKRLQKLESSGVIKRRIALLDPVKLGLQMTVFVSIEVGDH
SEQGLDHFAEEVAQMEEVMDFYRMAGDIDYLLRVVVPDTAAFDAFYKRLIGLVSLKKVTSRIALEGIKTETALPISAS

Sequences:

>Translated_158_residues
MSEPRLMDTIDKRILRLVQKDASLSISEIATQVGLSQTPCWKRLQKLESSGVIKRRIALLDPVKLGLQMTVFVSIEVGDH
SEQGLDHFAEEVAQMEEVMDFYRMAGDIDYLLRVVVPDTAAFDAFYKRLIGLVSLKKVTSRIALEGIKTETALPISAS
>Mature_157_residues
SEPRLMDTIDKRILRLVQKDASLSISEIATQVGLSQTPCWKRLQKLESSGVIKRRIALLDPVKLGLQMTVFVSIEVGDHS
EQGLDHFAEEVAQMEEVMDFYRMAGDIDYLLRVVVPDTAAFDAFYKRLIGLVSLKKVTSRIALEGIKTETALPISAS

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=47.682119205298, Blast_Score=148, Evalue=2e-37,
Organism=Escherichia coli, GI1787116, Length=156, Percent_Identity=33.974358974359, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17653; Mature: 17522

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPRLMDTIDKRILRLVQKDASLSISEIATQVGLSQTPCWKRLQKLESSGVIKRRIALL
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHH
DPVKLGLQMTVFVSIEVGDHSEQGLDHFAEEVAQMEEVMDFYRMAGDIDYLLRVVVPDTA
HHHHHCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH
AFDAFYKRLIGLVSLKKVTSRIALEGIKTETALPISAS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEPRLMDTIDKRILRLVQKDASLSISEIATQVGLSQTPCWKRLQKLESSGVIKRRIALL
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHH
DPVKLGLQMTVFVSIEVGDHSEQGLDHFAEEVAQMEEVMDFYRMAGDIDYLLRVVVPDTA
HHHHHCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH
AFDAFYKRLIGLVSLKKVTSRIALEGIKTETALPISAS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]