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The map label for this gene is 182678926

Identifier: 182678926

GI number: 182678926

Start: 2235148

End: 2236365

Strand: Direct

Name: 182678926

Synonym: Bind_1960

Alternate gene names: NA

Gene position: 2235148-2236365 (Clockwise)

Preceding gene: 182678924

Following gene: 182678930

Centisome position: 53.6

GC content: 54.43

Gene sequence:

>1218_bases
ATGATTTACCAAACATATGAAGTGCAGGAGAACCTGCTCGACCTGCTCAGGCCATTGGCTGCCACGGCAGGAAAGACACT
GCGATCGCCATACCCTGGGCTTGGGCAGGTTTGGCCAGCCAGTGAAATCGTCGGCATTTTAGAGACTTTCGCCAATCTTT
CTGTGACGCATGTGCGCCGCCCTTTTGCCATCAACTCGGTTCTTGTGGGTGATCGCCGGGTCCCGGTGACGGAAGAAATC
GTCGCTTCGACACCCTTTGCCACCCTCCTTCATTTCAAGAAGGAAACCAACCTGCACCAGCAACGCGTTTTGGTGGTCGC
CCCCATGTCAGGTCATTTTGCGACCCTGCTGCGCGCGATGATCGAGACCGTTTTAGCTGACCATGACGTCTATATCACGG
ATTGGCACAATGCACGCGACGTCCCGCTGAGTGCGGGCAGATTCGATCTCAGCACCTTTGTCGACCATGTAATCGATTTC
CTGCGCATGATGGGGGCGAGATCGCATGTCATCGCGGTATGCCAACCATGCGTCCCCGTGCTCGCCGCAGCTGCCCTCAT
GAACGAAGACAAGGACGACGCACAGCCTTCCAGCATGACCTTGATGGCTGGACCGATCGACACGCGCATCAATCCGACCA
AGGTCAACGCACTCGCGACCCAGCATCCAATCGCCTGGTTCGAGCAGCACCTGACGGATAAGGTGCCGCTCTGTTACAAG
GGCGCACGACGGGATGTCTATCCGGGCTTTCTACAACTCACGGCCTTTATGAGCATGAATTGGGACCGCCATCTTCGCGC
CTTCAAGGATATGGCGGAGGCGCGGGTGGCCAATGATCTGCCAAGACTTCAAGCCATTCAAACATTTTATGATGAATATT
TGACCGTTATGGACTTGCCGGCCGAACTCTATTTGCAAACCATTCAATTGATTTTTCAGGATCACGCTTTACCACGTGGC
AAGCTCACGGTGCATGGCCGTCCAATCAATCCCAAAGCTATCAAACATACCGCGCTCATGACCGTTGAGGGTGAGCGAGA
CGATATTTGCGGCCTCGGCCAAACGCTTGCTGCCCAGGAGCTTTGCTCGGGATTGAAACCCTATATGAAGTTCCATCATG
TGCAGATGGGCGTTGGTCATTATGGCGTCTTCGCCGGGCGACGCTGGAGCACTGAAATTTATCCCAGAGTGCGTTACACC
ATTCAAATGACAAGCTGA

Upstream 100 bases:

>100_bases
AAATTTTACGCCGGCTTTCTGAACAGCATTTGACGAGCATAGAATAAGCAACTCATCACGGTTCACGCGCGTTATTTCGC
CCGAGTGATGGTGCGCGTTG

Downstream 100 bases:

>100_bases
AAACCGGCATGGTCTTCAAGGGTGGAAGTGGCGGTCACAGGAAACCGCCACTTACGGAAACACCCCGCGCAGCCGTTTGG
CCTCGGTCACGCGGGAGACG

Product: polyhydroxyalkanoate depolymerase, intracellular

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; PHB De-Polymerase Domain-Containing Protein; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; Poly(3-Hydroxybutyrate) Depolymerase; Poly(3-Hydroxyalkanoate)Synthetase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; PHB De-Polymerase; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MIYQTYEVQENLLDLLRPLAATAGKTLRSPYPGLGQVWPASEIVGILETFANLSVTHVRRPFAINSVLVGDRRVPVTEEI
VASTPFATLLHFKKETNLHQQRVLVVAPMSGHFATLLRAMIETVLADHDVYITDWHNARDVPLSAGRFDLSTFVDHVIDF
LRMMGARSHVIAVCQPCVPVLAAAALMNEDKDDAQPSSMTLMAGPIDTRINPTKVNALATQHPIAWFEQHLTDKVPLCYK
GARRDVYPGFLQLTAFMSMNWDRHLRAFKDMAEARVANDLPRLQAIQTFYDEYLTVMDLPAELYLQTIQLIFQDHALPRG
KLTVHGRPINPKAIKHTALMTVEGERDDICGLGQTLAAQELCSGLKPYMKFHHVQMGVGHYGVFAGRRWSTEIYPRVRYT
IQMTS

Sequences:

>Translated_405_residues
MIYQTYEVQENLLDLLRPLAATAGKTLRSPYPGLGQVWPASEIVGILETFANLSVTHVRRPFAINSVLVGDRRVPVTEEI
VASTPFATLLHFKKETNLHQQRVLVVAPMSGHFATLLRAMIETVLADHDVYITDWHNARDVPLSAGRFDLSTFVDHVIDF
LRMMGARSHVIAVCQPCVPVLAAAALMNEDKDDAQPSSMTLMAGPIDTRINPTKVNALATQHPIAWFEQHLTDKVPLCYK
GARRDVYPGFLQLTAFMSMNWDRHLRAFKDMAEARVANDLPRLQAIQTFYDEYLTVMDLPAELYLQTIQLIFQDHALPRG
KLTVHGRPINPKAIKHTALMTVEGERDDICGLGQTLAAQELCSGLKPYMKFHHVQMGVGHYGVFAGRRWSTEIYPRVRYT
IQMTS
>Mature_405_residues
MIYQTYEVQENLLDLLRPLAATAGKTLRSPYPGLGQVWPASEIVGILETFANLSVTHVRRPFAINSVLVGDRRVPVTEEI
VASTPFATLLHFKKETNLHQQRVLVVAPMSGHFATLLRAMIETVLADHDVYITDWHNARDVPLSAGRFDLSTFVDHVIDF
LRMMGARSHVIAVCQPCVPVLAAAALMNEDKDDAQPSSMTLMAGPIDTRINPTKVNALATQHPIAWFEQHLTDKVPLCYK
GARRDVYPGFLQLTAFMSMNWDRHLRAFKDMAEARVANDLPRLQAIQTFYDEYLTVMDLPAELYLQTIQLIFQDHALPRG
KLTVHGRPINPKAIKHTALMTVEGERDDICGLGQTLAAQELCSGLKPYMKFHHVQMGVGHYGVFAGRRWSTEIYPRVRYT
IQMTS

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45570; Mature: 45570

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYQTYEVQENLLDLLRPLAATAGKTLRSPYPGLGQVWPASEIVGILETFANLSVTHVRR
CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC
PFAINSVLVGDRRVPVTEEIVASTPFATLLHFKKETNLHQQRVLVVAPMSGHFATLLRAM
CCEECEEEECCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH
IETVLADHDVYITDWHNARDVPLSAGRFDLSTFVDHVIDFLRMMGARSHVIAVCQPCVPV
HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LAAAALMNEDKDDAQPSSMTLMAGPIDTRINPTKVNALATQHPIAWFEQHLTDKVPLCYK
HHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHC
GARRDVYPGFLQLTAFMSMNWDRHLRAFKDMAEARVANDLPRLQAIQTFYDEYLTVMDLP
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
AELYLQTIQLIFQDHALPRGKLTVHGRPINPKAIKHTALMTVEGERDDICGLGQTLAAQE
HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHEEEEEEEECCCCCCCCCCHHHHHHH
LCSGLKPYMKFHHVQMGVGHYGVFAGRRWSTEIYPRVRYTIQMTS
HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MIYQTYEVQENLLDLLRPLAATAGKTLRSPYPGLGQVWPASEIVGILETFANLSVTHVRR
CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC
PFAINSVLVGDRRVPVTEEIVASTPFATLLHFKKETNLHQQRVLVVAPMSGHFATLLRAM
CCEECEEEECCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH
IETVLADHDVYITDWHNARDVPLSAGRFDLSTFVDHVIDFLRMMGARSHVIAVCQPCVPV
HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LAAAALMNEDKDDAQPSSMTLMAGPIDTRINPTKVNALATQHPIAWFEQHLTDKVPLCYK
HHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHC
GARRDVYPGFLQLTAFMSMNWDRHLRAFKDMAEARVANDLPRLQAIQTFYDEYLTVMDLP
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
AELYLQTIQLIFQDHALPRGKLTVHGRPINPKAIKHTALMTVEGERDDICGLGQTLAAQE
HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHEEEEEEEECCCCCCCCCCHHHHHHH
LCSGLKPYMKFHHVQMGVGHYGVFAGRRWSTEIYPRVRYTIQMTS
HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA