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The map label for this gene is yohK [H]

Identifier: 182678920

GI number: 182678920

Start: 2224895

End: 2225614

Strand: Direct

Name: yohK [H]

Synonym: Bind_1954

Alternate gene names: 182678920

Gene position: 2224895-2225614 (Clockwise)

Preceding gene: 182678919

Following gene: 182678921

Centisome position: 53.35

GC content: 62.08

Gene sequence:

>720_bases
ATGCATGAGACCTCCAACGGCATCTGGGTCTATCTTGCCGCCCATCCCCTCTTCTGGCTGACAGCAACGCTCGGCGCCTT
CATCCTGGCCGAGGAATTCGCGGCCCGTTTTGGGCGCCCTCCTTGGGCCAATCCGGTTTTGATCGCCTCTCTTTTGCTCA
TCAGCCTTCTGCTCGCGACCGGCACCGATTACGCGACCTATTTCCAAGGCGCGCAGTTCATCCATTTTCTGCTCGGCCCC
GCGACCGTGGCGCTTGCCGTGCCGCTTTACCGCAATCTCGGGCGCGTGCGTGCCCTGTTCATTCCGATGATGCTGGCATT
GGTTTCCGGCTCTCTGGTCGCCATCATCAGCGCCGTCCTGCTCGGCCGGCTGATGGGCTTGCCACGCGAAGTGGTGATTT
CACTCGCTCCGAAATCGGTCACCATGCCGATTGCCATGAGTCTCGCTGAAAATCTCGGCGGCGTTCCGGCCTTGACCGCC
TGTTTCGTCCTGCTGACGGGGATTTTCGGAGCCATATCGGTCACAGCACTTTTGAACTTGCTGCGCATCAAGGATTTCGC
GGCACGTGGCTTCGCGGTCGGCCTGTCCGCGCATGGAATCGGCGTCGCCCGCGCGCTGCAATGCGATCCCGTGGCCGGCG
CGTTTGCCGGTATCGCGCTGGGGCTGAACGGCGCCTTGACCAGCATGCTGGTTCCCGTGGTGCTGCCCTGGCTTCTCTAA

Upstream 100 bases:

>100_bases
ATGCGCCGGACCCTGCCCCCGGGCAATCTGGATTTTCAGGCCACGGGGGAAACACCGCAACGGGAGGAATCCCTTCCAGA
GACGAAAGGAGCGGACACCC

Downstream 100 bases:

>100_bases
TGCGCTGCACCTAAAAGTTTAATGATGTCTTAACTATATACAGAAAATGAGCACAAAAATCGTGCCGGATCGCGGGTAAA
ATTTGTCCACAGCCAAGATC

Product: LrgB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MHETSNGIWVYLAAHPLFWLTATLGAFILAEEFAARFGRPPWANPVLIASLLLISLLLATGTDYATYFQGAQFIHFLLGP
ATVALAVPLYRNLGRVRALFIPMMLALVSGSLVAIISAVLLGRLMGLPREVVISLAPKSVTMPIAMSLAENLGGVPALTA
CFVLLTGIFGAISVTALLNLLRIKDFAARGFAVGLSAHGIGVARALQCDPVAGAFAGIALGLNGALTSMLVPVVLPWLL

Sequences:

>Translated_239_residues
MHETSNGIWVYLAAHPLFWLTATLGAFILAEEFAARFGRPPWANPVLIASLLLISLLLATGTDYATYFQGAQFIHFLLGP
ATVALAVPLYRNLGRVRALFIPMMLALVSGSLVAIISAVLLGRLMGLPREVVISLAPKSVTMPIAMSLAENLGGVPALTA
CFVLLTGIFGAISVTALLNLLRIKDFAARGFAVGLSAHGIGVARALQCDPVAGAFAGIALGLNGALTSMLVPVVLPWLL
>Mature_239_residues
MHETSNGIWVYLAAHPLFWLTATLGAFILAEEFAARFGRPPWANPVLIASLLLISLLLATGTDYATYFQGAQFIHFLLGP
ATVALAVPLYRNLGRVRALFIPMMLALVSGSLVAIISAVLLGRLMGLPREVVISLAPKSVTMPIAMSLAENLGGVPALTA
CFVLLTGIFGAISVTALLNLLRIKDFAARGFAVGLSAHGIGVARALQCDPVAGAFAGIALGLNGALTSMLVPVVLPWLL

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=217, Percent_Identity=41.4746543778802, Blast_Score=161, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 25042; Mature: 25042

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHETSNGIWVYLAAHPLFWLTATLGAFILAEEFAARFGRPPWANPVLIASLLLISLLLAT
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
GTDYATYFQGAQFIHFLLGPATVALAVPLYRNLGRVRALFIPMMLALVSGSLVAIISAVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LGRLMGLPREVVISLAPKSVTMPIAMSLAENLGGVPALTACFVLLTGIFGAISVTALLNL
HHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRIKDFAARGFAVGLSAHGIGVARALQCDPVAGAFAGIALGLNGALTSMLVPVVLPWLL
HHHHHHHHCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MHETSNGIWVYLAAHPLFWLTATLGAFILAEEFAARFGRPPWANPVLIASLLLISLLLAT
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
GTDYATYFQGAQFIHFLLGPATVALAVPLYRNLGRVRALFIPMMLALVSGSLVAIISAVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LGRLMGLPREVVISLAPKSVTMPIAMSLAENLGGVPALTACFVLLTGIFGAISVTALLNL
HHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRIKDFAARGFAVGLSAHGIGVARALQCDPVAGAFAGIALGLNGALTSMLVPVVLPWLL
HHHHHHHHCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]