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The map label for this gene is ykgD [C]

Identifier: 182678799

GI number: 182678799

Start: 2078700

End: 2079659

Strand: Reverse

Name: ykgD [C]

Synonym: Bind_1829

Alternate gene names: 182678799

Gene position: 2079659-2078700 (Counterclockwise)

Preceding gene: 182678802

Following gene: 182678798

Centisome position: 49.87

GC content: 66.35

Gene sequence:

>960_bases
ATGGTCGACCCGCTCGCGGAGGTTGTCACGCTGCTCCAGCCGGCCGCCCGGTTCTCGAAGGCCGTTGTCGGTGCCGGGTC
GTGGCACGTCCGCCGTTCGGATGCCGGGCAGCCCTTCTACTGCGTGGTCCTTGAGGGCGCGTGCCGCCTTGTGCTCGACG
GGCGCGAGCCGATCGAGCTCCGGTCGGGCGACTTCGTCTTGATCCCGGCGGCTTATGGTGTCGGGATGTCCAGCCTCGCA
CCTTTCGCAGAAGACACCCCCGAAACCCTGCCTGTCGCGCTGGCGACCGGCGAATTCAGGATCGGCGACCAGGAGGGCCC
GGCCGACCTGCGGATGCTGGCGGGCCACTGCAGCTTTGGCTCCCCTGACGCAGGTTTGCTGGTGTCGCTGCTTCCCCAGC
TCGTACATGTGCGTGGCGAGCCACGGCTCACTACCCTCGTGCAGCTCGTGAGAGACGAGTTCCGCGAATGGCGCCCGGCG
CGCGAGATCATCCTCGCCCGCCTCATCGAGGTTCTCCTCATCGAAGCGCTCCGCTCAACGGCGGGCACTGAAGTGTCGCC
CGGCCTCGTGCGCGGGCTTGCCGACGAGCGCCTTGCCGTCGCGATACGACGGATGCACGAGAGTCCAACCAGGGCGTGGA
CGGTCGCACAATTGGCGAAGGAGGCGGCGCTCTCTCGGTCAGCGTTTTTCGAGCGATTCAACCGCGCAGTCGGAGTCGCG
CCGATGGAGTATTTGCTCGCCTGGCGCATGGCCTTGGCAAAGAACATGCTCCGGCAGAACGAGGGGAGTGTCGCCGAAAT
TGCGGAACGCGTCGGTTATGGCTCCGCAAGCGCATTCAGCGTCGCATTCACCCGCCATGTCGGACTGCCGCCGGTGCGGT
ACGCGCGCGAGCAGACAGAACTGGTGACGCTTACAGACTCGACATTCCGCGGCAATCACGCCGGCCGCTTGGAGCAATGA

Upstream 100 bases:

>100_bases
TGGGGTCTCTTGGAAGTGGTTTGCCATACCAAGACGATAGATCGTTGCAGTCGGACCTTCTATAATCAAAAGTCCAAGAT
TCGTTTGCAGGAGTCCGGAT

Downstream 100 bases:

>100_bases
TCATATCCCCTCGCGTCCTGGCGTCGAGCGCCGCCTGAGCGACGGCCTCTGGCAACTGGGCATTGCCAGCCGACTGGCCG
GCCCGTCGATCTGTTGCTGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MVDPLAEVVTLLQPAARFSKAVVGAGSWHVRRSDAGQPFYCVVLEGACRLVLDGREPIELRSGDFVLIPAAYGVGMSSLA
PFAEDTPETLPVALATGEFRIGDQEGPADLRMLAGHCSFGSPDAGLLVSLLPQLVHVRGEPRLTTLVQLVRDEFREWRPA
REIILARLIEVLLIEALRSTAGTEVSPGLVRGLADERLAVAIRRMHESPTRAWTVAQLAKEAALSRSAFFERFNRAVGVA
PMEYLLAWRMALAKNMLRQNEGSVAEIAERVGYGSASAFSVAFTRHVGLPPVRYAREQTELVTLTDSTFRGNHAGRLEQ

Sequences:

>Translated_319_residues
MVDPLAEVVTLLQPAARFSKAVVGAGSWHVRRSDAGQPFYCVVLEGACRLVLDGREPIELRSGDFVLIPAAYGVGMSSLA
PFAEDTPETLPVALATGEFRIGDQEGPADLRMLAGHCSFGSPDAGLLVSLLPQLVHVRGEPRLTTLVQLVRDEFREWRPA
REIILARLIEVLLIEALRSTAGTEVSPGLVRGLADERLAVAIRRMHESPTRAWTVAQLAKEAALSRSAFFERFNRAVGVA
PMEYLLAWRMALAKNMLRQNEGSVAEIAERVGYGSASAFSVAFTRHVGLPPVRYAREQTELVTLTDSTFRGNHAGRLEQ
>Mature_319_residues
MVDPLAEVVTLLQPAARFSKAVVGAGSWHVRRSDAGQPFYCVVLEGACRLVLDGREPIELRSGDFVLIPAAYGVGMSSLA
PFAEDTPETLPVALATGEFRIGDQEGPADLRMLAGHCSFGSPDAGLLVSLLPQLVHVRGEPRLTTLVQLVRDEFREWRPA
REIILARLIEVLLIEALRSTAGTEVSPGLVRGLADERLAVAIRRMHESPTRAWTVAQLAKEAALSRSAFFERFNRAVGVA
PMEYLLAWRMALAKNMLRQNEGSVAEIAERVGYGSASAFSVAFTRHVGLPPVRYAREQTELVTLTDSTFRGNHAGRLEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=303, Percent_Identity=24.7524752475248, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34824; Mature: 34824

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDPLAEVVTLLQPAARFSKAVVGAGSWHVRRSDAGQPFYCVVLEGACRLVLDGREPIEL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCEEEEECCCCCCEE
RSGDFVLIPAAYGVGMSSLAPFAEDTPETLPVALATGEFRIGDQEGPADLRMLAGHCSFG
CCCCEEEEECHHCCCHHHCCCCCCCCCCCCEEEEECCCEEECCCCCCHHHHHHHHCCCCC
SPDAGLLVSLLPQLVHVRGEPRLTTLVQLVRDEFREWRPAREIILARLIEVLLIEALRST
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AGTEVSPGLVRGLADERLAVAIRRMHESPTRAWTVAQLAKEAALSRSAFFERFNRAVGVA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PMEYLLAWRMALAKNMLRQNEGSVAEIAERVGYGSASAFSVAFTRHVGLPPVRYAREQTE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCE
LVTLTDSTFRGNHAGRLEQ
EEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MVDPLAEVVTLLQPAARFSKAVVGAGSWHVRRSDAGQPFYCVVLEGACRLVLDGREPIEL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCEEEEECCCCCCEE
RSGDFVLIPAAYGVGMSSLAPFAEDTPETLPVALATGEFRIGDQEGPADLRMLAGHCSFG
CCCCEEEEECHHCCCHHHCCCCCCCCCCCCEEEEECCCEEECCCCCCHHHHHHHHCCCCC
SPDAGLLVSLLPQLVHVRGEPRLTTLVQLVRDEFREWRPAREIILARLIEVLLIEALRST
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AGTEVSPGLVRGLADERLAVAIRRMHESPTRAWTVAQLAKEAALSRSAFFERFNRAVGVA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PMEYLLAWRMALAKNMLRQNEGSVAEIAERVGYGSASAFSVAFTRHVGLPPVRYAREQTE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCE
LVTLTDSTFRGNHAGRLEQ
EEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]