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The map label for this gene is ihfA [H]

Identifier: 182678712

GI number: 182678712

Start: 1967746

End: 1968114

Strand: Direct

Name: ihfA [H]

Synonym: Bind_1739

Alternate gene names: 182678712

Gene position: 1967746-1968114 (Clockwise)

Preceding gene: 182678711

Following gene: 182678713

Centisome position: 47.19

GC content: 57.18

Gene sequence:

>369_bases
ATGAAAGTGAATCGGGAGTCTGAGGGCGAGTTGACAGCCCTGCAACAACGCAAGACGGCGACGAGGGCAGATCTGCTCGA
CGCGATTTATACGTCCTGTTCCTTTTTATCCCGCGCACAAACCCGCGAGATTTTTGAAATGGCGCTGGAGGAAATTTCCG
AGGCCTTATTACGTGGCGAAACGGTCAAGCTCCGTTCATTTGGCCTATTTTCCGTGCGCGCCAAGCGGGAGCGGATCGGA
CGCAATCCTCGGACTGGCGTCGAGGTTCCGATCAAACCACGCCGGGTTCTCACCTTCAAAGCCTCGCCTGTTCTCGCCGC
CTCGGTCAATGGAACCCAGGTGCCGGTCGAGGACGGCCACGAAGATTGA

Upstream 100 bases:

>100_bases
GCTCTCTCAGTGCTGGATGCCTGCCATGGCGCGGGTCCAGTGAATGCACTGAAAAACGCGCCGGAAAGGTGCGACATGCT
GGAGAGCGCTTAGGAGGAAG

Downstream 100 bases:

>100_bases
AATCAATCATCAGGACCGGCGTCGCGTCGGCACCATAATGCCTTTACCTTAAGCCTGACTTCAGCGGCTTCATGCCTCCG
CCGCTGAAGTCAGGCTTTTC

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKVNRESEGELTALQQRKTATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG
RNPRTGVEVPIKPRRVLTFKASPVLAASVNGTQVPVEDGHED

Sequences:

>Translated_122_residues
MKVNRESEGELTALQQRKTATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG
RNPRTGVEVPIKPRRVLTFKASPVLAASVNGTQVPVEDGHED
>Mature_122_residues
MKVNRESEGELTALQQRKTATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG
RNPRTGVEVPIKPRRVLTFKASPVLAASVNGTQVPVEDGHED

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=41.5730337078652, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13645; Mature: 13645

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNRESEGELTALQQRKTATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TVKLRSFGLFSVRAKRERIGRNPRTGVEVPIKPRRVLTFKASPVLAASVNGTQVPVEDGH
CEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC
ED
CC
>Mature Secondary Structure
MKVNRESEGELTALQQRKTATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TVKLRSFGLFSVRAKRERIGRNPRTGVEVPIKPRRVLTFKASPVLAASVNGTQVPVEDGH
CEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC
ED
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA