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The map label for this gene is psd

Identifier: 182678653

GI number: 182678653

Start: 1898032

End: 1898730

Strand: Reverse

Name: psd

Synonym: Bind_1679

Alternate gene names: 182678653

Gene position: 1898730-1898032 (Counterclockwise)

Preceding gene: 182678656

Following gene: 182678652

Centisome position: 45.53

GC content: 58.94

Gene sequence:

>699_bases
ATGTCGATTCTTGCTTCGATCCAACGGCAGGTCACGCCGATCCATCCGGAAGGGTACCCCTTCATTGGCGGTTTCGCTGT
CGCGACTCTCGTGCTCAGCTGGCTCTGGAGTCCGCTCGGCTGGCTTGGTTTGATGGCGACCCTTTGGTGCGCCTATTTCT
TTCGCGATCCGGCGCGTTTGACGCCGCTCGATGAATCGATCGTCATTTCACCGGCCGATGGGATCGTCTCTTCGGTGGGC
TATCATATGCCTCCGCCTGAATTGGGCCTGGGTGCCGAGCCCATGCAGCGGATTTCCGTGTTCATGTCGGTCTTCGATTG
TCACGTCAATCGTGCCCCGGTGACGGGGCGTGTCACCAAAATTGTCTATCGGCCTGGTCTCTTTCTCAATGCCGATCTCG
ACAAGGCGAGCATGGATAATGAGCGCAATGGATTGGTCATAGAAAATAACAATGGCCGGTTCGGTGTCGTGCAGATCGCC
GGGCTCGTGGCGCGGCGCATCGTGTGCTTTGCGGAAAAAGGCGATCATTTGACCACGGGAGAGCGGTTCGGCCTCATCCG
TTTCGGCTCCCGGCTCGATGTTTATATGCCGGAGGGCGTAAGGCCGCTGGTTGGCGTCGGTGCCAAGGCCGTTGCCGGGG
AAACGATTTTGGCGGATCGCCAGACCGACAAGCCGCGTCCGGCCTTCCGTTACGGGTAA

Upstream 100 bases:

>100_bases
ATTGTGTCGCAGCGACTCCGTGGTTATGGCGAATTTGCTAAACCAATCCAGGGTCGCGCAAGGCAATCCTAATTATAAGA
TCCCCGCAACAGGTTCCTTC

Downstream 100 bases:

>100_bases
TCGTCCATATTTTTCGCTTCGAGGATCGAAGGGAGCGCTTCTTCGTTCTTTACCCCGGATCTTCGCTTTTTTGCGAGATC
GGCTAAAATTCAAGCTTGCT

Product: phosphatidylserine decarboxylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSILASIQRQVTPIHPEGYPFIGGFAVATLVLSWLWSPLGWLGLMATLWCAYFFRDPARLTPLDESIVISPADGIVSSVG
YHMPPPELGLGAEPMQRISVFMSVFDCHVNRAPVTGRVTKIVYRPGLFLNADLDKASMDNERNGLVIENNNGRFGVVQIA
GLVARRIVCFAEKGDHLTTGERFGLIRFGSRLDVYMPEGVRPLVGVGAKAVAGETILADRQTDKPRPAFRYG

Sequences:

>Translated_232_residues
MSILASIQRQVTPIHPEGYPFIGGFAVATLVLSWLWSPLGWLGLMATLWCAYFFRDPARLTPLDESIVISPADGIVSSVG
YHMPPPELGLGAEPMQRISVFMSVFDCHVNRAPVTGRVTKIVYRPGLFLNADLDKASMDNERNGLVIENNNGRFGVVQIA
GLVARRIVCFAEKGDHLTTGERFGLIRFGSRLDVYMPEGVRPLVGVGAKAVAGETILADRQTDKPRPAFRYG
>Mature_231_residues
SILASIQRQVTPIHPEGYPFIGGFAVATLVLSWLWSPLGWLGLMATLWCAYFFRDPARLTPLDESIVISPADGIVSSVGY
HMPPPELGLGAEPMQRISVFMSVFDCHVNRAPVTGRVTKIVYRPGLFLNADLDKASMDNERNGLVIENNNGRFGVVQIAG
LVARRIVCFAEKGDHLTTGERFGLIRFGSRLDVYMPEGVRPLVGVGAKAVAGETILADRQTDKPRPAFRYG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_BEII9 (B2IC55)

Other databases:

- EMBL:   CP001016
- RefSeq:   YP_001832799.1
- GeneID:   6199819
- GenomeReviews:   CP001016_GR
- KEGG:   bid:Bind_1679
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   CLSK2405552
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25415; Mature: 25284

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILASIQRQVTPIHPEGYPFIGGFAVATLVLSWLWSPLGWLGLMATLWCAYFFRDPARL
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPLDESIVISPADGIVSSVGYHMPPPELGLGAEPMQRISVFMSVFDCHVNRAPVTGRVTK
CCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
IVYRPGLFLNADLDKASMDNERNGLVIENNNGRFGVVQIAGLVARRIVCFAEKGDHLTTG
EEECCCEEEECCCCHHCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHEECCCCCCCCC
ERFGLIRFGSRLDVYMPEGVRPLVGVGAKAVAGETILADRQTDKPRPAFRYG
CCEEEEEECCEEEEECCCCCCHHHHCCCHHHCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SILASIQRQVTPIHPEGYPFIGGFAVATLVLSWLWSPLGWLGLMATLWCAYFFRDPARL
CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPLDESIVISPADGIVSSVGYHMPPPELGLGAEPMQRISVFMSVFDCHVNRAPVTGRVTK
CCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
IVYRPGLFLNADLDKASMDNERNGLVIENNNGRFGVVQIAGLVARRIVCFAEKGDHLTTG
EEECCCEEEECCCCHHCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHEECCCCCCCCC
ERFGLIRFGSRLDVYMPEGVRPLVGVGAKAVAGETILADRQTDKPRPAFRYG
CCEEEEEECCEEEEECCCCCCHHHHCCCHHHCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA