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The map label for this gene is nodB [H]

Identifier: 182678594

GI number: 182678594

Start: 1830656

End: 1831621

Strand: Direct

Name: nodB [H]

Synonym: Bind_1620

Alternate gene names: 182678594

Gene position: 1830656-1831621 (Clockwise)

Preceding gene: 182678592

Following gene: 182678595

Centisome position: 43.9

GC content: 60.35

Gene sequence:

>966_bases
ATGAAAAATCGGGACGCGCTCTTTCTTTTCTTAATGGTCGCGGCACTCGTCCGGCCAAATGTTTGGCTGGACCTTGGCCC
CGGCCCCGCCGCCGCGAGCGAGACCATCGACATGGCCTGCGGGTCCAAGCAGCCGGGTGTTCAGCGACTTGGTACGGCGA
GGCAGATCGAGGTCGGGACGCAAGGTGGCCTGCAAGTTGGCCTCAAAACCTATCCGCGTGACCTCGCTTTGGCCGATCAC
GAAATTGTCCTGACCTTTGATGATGGACCCTGGCCGACAACGACGCCGAAAATTCTTGATGCACTGGCGGCGCAATGCGT
CAAGGCAACTTTCTTCCTCATCGGGCGCAACGCGCAAGCGGCCCCGGCTCTTGTCCGGCGCGAAATCGCCGAGGGCCATA
CGGTCGGCCATCATACATTCTCTCATCCCGGCGCCACTTTGCGAGGCATCGGCGACATACAAGCGCGCGCTGATATCGAC
AAAGGTTTCACAGCCGATGACAAAGCAGCCTATGGCAAGGCAGACGCCGAACCCCGTGTCCCTTTCTTTCGCTTCCCGGG
TTTTGCGGATACGCCGGCTTTGAATGCGTGGCTCAGCGAACGCAATATTGGAATTTTCGGGACAGATCTTTGGGCCTCGG
ACTGGTTGCCCATGACGCCGGAAGCCGAGGAAGCCTTGGTTCTTGGCCGCATCGAGAAACAGGGGCGCGGCATCGTGCTG
ATGCATGACAGCAAGGCCTCGACCGCCGCCATGTTACCCAAGCTTCTGGAGGATCTCCGCCTGCGCGGCTTTCGAATTGT
TCATCTCGTGCCGGGCTCGGGCAAGACGGAGACCATGCCAGCGCCAGCGGGTTGGACTTCGGAGACCGAGGCCATCATCG
AAACAGTCCTGCGCAAACACGCGCCAAGCCGCAAGCAGACACCAGCGGCAACGCCACCAAGGTCGGCGGAGCCATTACCA
CAATGA

Upstream 100 bases:

>100_bases
CGCTTGGTCTTGCAGATCGGCCACGCGCATTACCTTGGAACGAAGAGTGGGATGCGCGGTTCATAGGCCGCATGGCCCCA
TAAGGTAAACCCACCCCCAC

Downstream 100 bases:

>100_bases
TGAAATTCAGGATTGTGGTTTAGCGGCGAGCGCGAAGAGCAGTGCGAACGCCTGCAAAGCGTTTTTGCGATTTTAAGATT
CTCTTCTGAGTCGCCGGTTA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKNRDALFLFLMVAALVRPNVWLDLGPGPAAASETIDMACGSKQPGVQRLGTARQIEVGTQGGLQVGLKTYPRDLALADH
EIVLTFDDGPWPTTTPKILDALAAQCVKATFFLIGRNAQAAPALVRREIAEGHTVGHHTFSHPGATLRGIGDIQARADID
KGFTADDKAAYGKADAEPRVPFFRFPGFADTPALNAWLSERNIGIFGTDLWASDWLPMTPEAEEALVLGRIEKQGRGIVL
MHDSKASTAAMLPKLLEDLRLRGFRIVHLVPGSGKTETMPAPAGWTSETEAIIETVLRKHAPSRKQTPAATPPRSAEPLP
Q

Sequences:

>Translated_321_residues
MKNRDALFLFLMVAALVRPNVWLDLGPGPAAASETIDMACGSKQPGVQRLGTARQIEVGTQGGLQVGLKTYPRDLALADH
EIVLTFDDGPWPTTTPKILDALAAQCVKATFFLIGRNAQAAPALVRREIAEGHTVGHHTFSHPGATLRGIGDIQARADID
KGFTADDKAAYGKADAEPRVPFFRFPGFADTPALNAWLSERNIGIFGTDLWASDWLPMTPEAEEALVLGRIEKQGRGIVL
MHDSKASTAAMLPKLLEDLRLRGFRIVHLVPGSGKTETMPAPAGWTSETEAIIETVLRKHAPSRKQTPAATPPRSAEPLP
Q
>Mature_321_residues
MKNRDALFLFLMVAALVRPNVWLDLGPGPAAASETIDMACGSKQPGVQRLGTARQIEVGTQGGLQVGLKTYPRDLALADH
EIVLTFDDGPWPTTTPKILDALAAQCVKATFFLIGRNAQAAPALVRREIAEGHTVGHHTFSHPGATLRGIGDIQARADID
KGFTADDKAAYGKADAEPRVPFFRFPGFADTPALNAWLSERNIGIFGTDLWASDWLPMTPEAEEALVLGRIEKQGRGIVL
MHDSKASTAAMLPKLLEDLRLRGFRIVHLVPGSGKTETMPAPAGWTSETEAIIETVLRKHAPSRKQTPAATPPRSAEPLP
Q

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 34614; Mature: 34614

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRDALFLFLMVAALVRPNVWLDLGPGPAAASETIDMACGSKQPGVQRLGTARQIEVGT
CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCHHHHCCCEEEEECC
QGGLQVGLKTYPRDLALADHEIVLTFDDGPWPTTTPKILDALAAQCVKATFFLIGRNAQA
CCCEEECHHHCCCCCEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCH
APALVRREIAEGHTVGHHTFSHPGATLRGIGDIQARADIDKGFTADDKAAYGKADAEPRV
HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCHHCCCCCCCCCC
PFFRFPGFADTPALNAWLSERNIGIFGTDLWASDWLPMTPEAEEALVLGRIEKQGRGIVL
CEEECCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHEEEHHHHCCCEEEE
MHDSKASTAAMLPKLLEDLRLRGFRIVHLVPGSGKTETMPAPAGWTSETEAIIETVLRKH
EECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
APSRKQTPAATPPRSAEPLPQ
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNRDALFLFLMVAALVRPNVWLDLGPGPAAASETIDMACGSKQPGVQRLGTARQIEVGT
CCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCHHHHCCCEEEEECC
QGGLQVGLKTYPRDLALADHEIVLTFDDGPWPTTTPKILDALAAQCVKATFFLIGRNAQA
CCCEEECHHHCCCCCEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCH
APALVRREIAEGHTVGHHTFSHPGATLRGIGDIQARADIDKGFTADDKAAYGKADAEPRV
HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCHHCCCCCCCCCC
PFFRFPGFADTPALNAWLSERNIGIFGTDLWASDWLPMTPEAEEALVLGRIEKQGRGIVL
CEEECCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHEEEHHHHCCCEEEE
MHDSKASTAAMLPKLLEDLRLRGFRIVHLVPGSGKTETMPAPAGWTSETEAIIETVLRKH
EECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
APSRKQTPAATPPRSAEPLPQ
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]