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The map label for this gene is xpsD [H]

Identifier: 182678562

GI number: 182678562

Start: 1788396

End: 1790801

Strand: Direct

Name: xpsD [H]

Synonym: Bind_1587

Alternate gene names: 182678562

Gene position: 1788396-1790801 (Clockwise)

Preceding gene: 182678554

Following gene: 182678563

Centisome position: 42.89

GC content: 58.4

Gene sequence:

>2406_bases
GTGAAAGCCTCCGCTTGCACTGACGATGGGCTGAGTAATATGGATTCTTATAGCCTATCTGGCAGGTTATGGCGGGTTTT
TACGAAAAATCGTAACCCTGCGATTATCGTTCAAGTCGCTTTAATATTCGCTCTTGCCACAATGCTGGCCGCTTGCAACG
GACTCACAGAGTCCGAAGTCAAGGCTTCCTTCGATAAGGCGAATGGCTTTGGCGGGCAGGATCTGGCTGCGCGTTCCAGC
ACGAATGGAAACGATACCTTTGGCGCTTCGCCGCTCCCCGCGGCTCCGGGACCCATCATTTCTCGCGGAGGAATCGCTGG
CGCTGCCCAAGCCAATGCGAGCGATTTCGCGGAAAACGGCGCGAGCGCGGTTACGGGTAATGTCACGCTGACGCCTGTGG
AGAGCGCGGGCGATTATCAATTGAATTTCGAAAATGCCGATGCCACGGCCGTCATCAAGACCGTGCTGGGCGATGTCCTG
CAGGTCAATTACGTCATCGATCCGCGCGTGAATGGGCAAATCAGCTTGACCTCATCCCGGCCGGTTCCGCGCAAATCCCT
GGTGGGATTGTTGGAATCGGCCTTGAGCGGGATCAATGCCGTCATCCTCAAGCAAAACGGCCTTTACCGGGTCGTGCCGG
CCGGCGACGCCACCACGATTCAGAATGTCCACTACCATGAAGCGGGCGAAGGCTTTGGCGTGACGGTCATCGGCATGAAG
AATGTCCCCGTCGCGCTGGCCGGACGCGTTCTCGAAGGATTGGGGAGCCGTGGCGGCTCGGTCCGGATGGAGGCCGATTC
CAATCTTCTGATCGTTCAGGGAACGGCCTCAGAGCGGCAGGCCGCGCTCGATGCGGCCTCCATGGTCGATGTCGATTGGC
TCAAAACCCGGTCCGTCGCCATTCTGCCTCTCACCAATTCGGCGCCGGACACGGTCATTGCCGAAGTCCATCGTATCCTT
GGCACCGGCGAAGGCGGTTTGAGCAAGGATATTGTCCAGATGCAGCCGATCAACCGGCTGAACGCGGTGCTGGCGGTTTC
GCGAAACCATGCCGCGATCGATAAAGTGACGCGGTGGGTCGCCAAGTTGGACAAGGCGGATTACGCCGCCCTTGGCGTCA
ACGTGTACAAGCTGCAATATGCCAATGCCAAAAACGTCGCGGCCATGCTGAACCAGATCTATGGCGGCAGCGGCGGCCAA
ACCGGCCAGGATCAGGATAAAGACGTTTTGCAACCCGGTGAGACGTCCACCACGGGTGCGCAGGCTGGAGGATTCGGGAC
CGGCACAGGAAGGACCGGTGGGGGCTTTGGTCAAAGCAGCGGGGTGTCCTCCGCAAACCCGAGTTCCTCGGGACAATCCT
CTTTTGGATCGACACAGCTTGCCAGCGCGTCATCCAATTCTTCTTTCGGGACAAGCCCCTTCGGCAGCTTAAAGACAGGA
GCGGCCGGCCAGGGTGGATCGTCGACGGGGCAAGACGATTCGGGCGGGCTCGGCGGCGGCGGTGCGGGCAAAGGGAAGAA
CATACGCATTACGCCCGATATTTCGACCAATTCGCTGCTGATCCACGCCAATCGGCTCGATTATCGGTTGATCGAACACA
CGATTCACGCCATGGACCGGCCACCGGTCCAGGTTGAGATCGAAGTGACCGTCGCCGAGGTCACCCTGACGGATGCGCTC
AATTACGGCGTACAAGCCTATCTCAACAGTTCCGCCGGCTCGTTGCAGATGCTTGGAAGCGCCGGTATTTCCAATGCCAG
CATTCCCCTGGTCACGCCCCATCCGGCGGTGAACCTGATGATCGGTCAGATCGCCAATCCGCGTGTGGTGATCAATGCTT
TGTCGAATATCACGGATGTCAAGGTTCTCTCGACACCTTCGCTCGTCGTGCTCGACCGGCAGCCCGCTGTGCTGCAGGTG
GGTAATCAGGTGCCCATCCTCAGTCAGCAGGCAACCTCGACACAAACGGCGAACCCGGCGATCGTCAACAGTGTCGATTA
CAAGGATACCGGCATTATCCTGAATGTGCTGCCGCGTGTGAATGCCAATGGCGTGGTGGCGCTGGATATCGAGCAGCAAA
TCAGCGCGGTGACAAACCCCGACCCGACGAATTTGACACCGACGATTTCGCAACGGCGGGTTCGCAGCACCATCGCCATT
CCCAATGGCCAGACGGTTCTGCTCGCCGGCCTGATCCAGGAAACAACCAATGGAACCCGGTCCGGCCTCCCCATCATCAG
CAAGATCCGTTTCCTGAACGATCTCGTCACCAATCATAATTCATCTGACAGCCGCACCGAATTGATCATGTTCATCAAGC
CTCAGATCCTCCGCAATGGTTTCGACTCGCAGCAGGTTTCCGAGGAATTTCGTGAGCGCTTGCAGATGATGCGCAGTCAC
CCGTGA

Upstream 100 bases:

>100_bases
TCCAAATGGCATGTGCCAAGAATTTGACGACTAAATTTAACGATCCAATTTAACGGTAAAAAGTTTGAAAGTTCGATGAC
AAACTGATGCAGGAGTTAAA

Downstream 100 bases:

>100_bases
GGATCAGCCGTGTTCGAGGATATGCGCTCTTCTTCGCCTGATCCGCCTCTCCTCGATTCACCTCTTCTGGAGCCGGGCGC
CGCACGCGGACCCATTGGAA

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 801; Mature: 801

Protein sequence:

>801_residues
MKASACTDDGLSNMDSYSLSGRLWRVFTKNRNPAIIVQVALIFALATMLAACNGLTESEVKASFDKANGFGGQDLAARSS
TNGNDTFGASPLPAAPGPIISRGGIAGAAQANASDFAENGASAVTGNVTLTPVESAGDYQLNFENADATAVIKTVLGDVL
QVNYVIDPRVNGQISLTSSRPVPRKSLVGLLESALSGINAVILKQNGLYRVVPAGDATTIQNVHYHEAGEGFGVTVIGMK
NVPVALAGRVLEGLGSRGGSVRMEADSNLLIVQGTASERQAALDAASMVDVDWLKTRSVAILPLTNSAPDTVIAEVHRIL
GTGEGGLSKDIVQMQPINRLNAVLAVSRNHAAIDKVTRWVAKLDKADYAALGVNVYKLQYANAKNVAAMLNQIYGGSGGQ
TGQDQDKDVLQPGETSTTGAQAGGFGTGTGRTGGGFGQSSGVSSANPSSSGQSSFGSTQLASASSNSSFGTSPFGSLKTG
AAGQGGSSTGQDDSGGLGGGGAGKGKNIRITPDISTNSLLIHANRLDYRLIEHTIHAMDRPPVQVEIEVTVAEVTLTDAL
NYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNLMIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQV
GNQVPILSQQATSTQTANPAIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAI
PNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILRNGFDSQQVSEEFRERLQMMRSH
P

Sequences:

>Translated_801_residues
MKASACTDDGLSNMDSYSLSGRLWRVFTKNRNPAIIVQVALIFALATMLAACNGLTESEVKASFDKANGFGGQDLAARSS
TNGNDTFGASPLPAAPGPIISRGGIAGAAQANASDFAENGASAVTGNVTLTPVESAGDYQLNFENADATAVIKTVLGDVL
QVNYVIDPRVNGQISLTSSRPVPRKSLVGLLESALSGINAVILKQNGLYRVVPAGDATTIQNVHYHEAGEGFGVTVIGMK
NVPVALAGRVLEGLGSRGGSVRMEADSNLLIVQGTASERQAALDAASMVDVDWLKTRSVAILPLTNSAPDTVIAEVHRIL
GTGEGGLSKDIVQMQPINRLNAVLAVSRNHAAIDKVTRWVAKLDKADYAALGVNVYKLQYANAKNVAAMLNQIYGGSGGQ
TGQDQDKDVLQPGETSTTGAQAGGFGTGTGRTGGGFGQSSGVSSANPSSSGQSSFGSTQLASASSNSSFGTSPFGSLKTG
AAGQGGSSTGQDDSGGLGGGGAGKGKNIRITPDISTNSLLIHANRLDYRLIEHTIHAMDRPPVQVEIEVTVAEVTLTDAL
NYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNLMIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQV
GNQVPILSQQATSTQTANPAIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAI
PNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILRNGFDSQQVSEEFRERLQMMRSH
P
>Mature_801_residues
MKASACTDDGLSNMDSYSLSGRLWRVFTKNRNPAIIVQVALIFALATMLAACNGLTESEVKASFDKANGFGGQDLAARSS
TNGNDTFGASPLPAAPGPIISRGGIAGAAQANASDFAENGASAVTGNVTLTPVESAGDYQLNFENADATAVIKTVLGDVL
QVNYVIDPRVNGQISLTSSRPVPRKSLVGLLESALSGINAVILKQNGLYRVVPAGDATTIQNVHYHEAGEGFGVTVIGMK
NVPVALAGRVLEGLGSRGGSVRMEADSNLLIVQGTASERQAALDAASMVDVDWLKTRSVAILPLTNSAPDTVIAEVHRIL
GTGEGGLSKDIVQMQPINRLNAVLAVSRNHAAIDKVTRWVAKLDKADYAALGVNVYKLQYANAKNVAAMLNQIYGGSGGQ
TGQDQDKDVLQPGETSTTGAQAGGFGTGTGRTGGGFGQSSGVSSANPSSSGQSSFGSTQLASASSNSSFGTSPFGSLKTG
AAGQGGSSTGQDDSGGLGGGGAGKGKNIRITPDISTNSLLIHANRLDYRLIEHTIHAMDRPPVQVEIEVTVAEVTLTDAL
NYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNLMIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQV
GNQVPILSQQATSTQTANPAIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAI
PNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILRNGFDSQQVSEEFRERLQMMRSH
P

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=528, Percent_Identity=25.5681818181818, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1789793, Length=296, Percent_Identity=24.3243243243243, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 83274; Mature: 83274

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASACTDDGLSNMDSYSLSGRLWRVFTKNRNPAIIVQVALIFALATMLAACNGLTESEV
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHH
KASFDKANGFGGQDLAARSSTNGNDTFGASPLPAAPGPIISRGGIAGAAQANASDFAENG
HHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCC
ASAVTGNVTLTPVESAGDYQLNFENADATAVIKTVLGDVLQVNYVIDPRVNGQISLTSSR
CCEEECCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCC
PVPRKSLVGLLESALSGINAVILKQNGLYRVVPAGDATTIQNVHYHEAGEGFGVTVIGMK
CCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCEEECEEEECCCCCCCEEEEEEC
NVPVALAGRVLEGLGSRGGSVRMEADSNLLIVQGTASERQAALDAASMVDVDWLKTRSVA
CCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCHHHHCCCCEE
ILPLTNSAPDTVIAEVHRILGTGEGGLSKDIVQMQPINRLNAVLAVSRNHAAIDKVTRWV
EEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHCEEEEECCCCHHHHHHHHHH
AKLDKADYAALGVNVYKLQYANAKNVAAMLNQIYGGSGGQTGQDQDKDVLQPGETSTTGA
HHHCCCCEEEECCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCC
QAGGFGTGTGRTGGGFGQSSGVSSANPSSSGQSSFGSTQLASASSNSSFGTSPFGSLKTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
AAGQGGSSTGQDDSGGLGGGGAGKGKNIRITPDISTNSLLIHANRLDYRLIEHTIHAMDR
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCC
PPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNLM
CCEEEEEEEEEEEEEEHHHHHHCEEEEECCCCCCEEEEECCCCCCCCCEEECCCCCCEEE
IGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANPA
EECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCEEEECCCCCEECCCCCCCCCCCCC
IVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAI
EEECCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEC
PNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILRNG
CCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHCC
FDSQQVSEEFRERLQMMRSHP
CCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKASACTDDGLSNMDSYSLSGRLWRVFTKNRNPAIIVQVALIFALATMLAACNGLTESEV
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHH
KASFDKANGFGGQDLAARSSTNGNDTFGASPLPAAPGPIISRGGIAGAAQANASDFAENG
HHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCC
ASAVTGNVTLTPVESAGDYQLNFENADATAVIKTVLGDVLQVNYVIDPRVNGQISLTSSR
CCEEECCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCC
PVPRKSLVGLLESALSGINAVILKQNGLYRVVPAGDATTIQNVHYHEAGEGFGVTVIGMK
CCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCEEECEEEECCCCCCCEEEEEEC
NVPVALAGRVLEGLGSRGGSVRMEADSNLLIVQGTASERQAALDAASMVDVDWLKTRSVA
CCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCHHHHCCCCEE
ILPLTNSAPDTVIAEVHRILGTGEGGLSKDIVQMQPINRLNAVLAVSRNHAAIDKVTRWV
EEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHCEEEEECCCCHHHHHHHHHH
AKLDKADYAALGVNVYKLQYANAKNVAAMLNQIYGGSGGQTGQDQDKDVLQPGETSTTGA
HHHCCCCEEEECCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCC
QAGGFGTGTGRTGGGFGQSSGVSSANPSSSGQSSFGSTQLASASSNSSFGTSPFGSLKTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
AAGQGGSSTGQDDSGGLGGGGAGKGKNIRITPDISTNSLLIHANRLDYRLIEHTIHAMDR
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCC
PPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNLM
CCEEEEEEEEEEEEEEHHHHHHCEEEEECCCCCCEEEEECCCCCCCCCEEECCCCCCEEE
IGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANPA
EECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCEEEECCCCCEECCCCCCCCCCCCC
IVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIAI
EEECCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEC
PNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILRNG
CCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHCC
FDSQQVSEEFRERLQMMRSHP
CCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]