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The map label for this gene is yqhC [H]

Identifier: 182678524

GI number: 182678524

Start: 1750537

End: 1751493

Strand: Direct

Name: yqhC [H]

Synonym: Bind_1549

Alternate gene names: 182678524

Gene position: 1750537-1751493 (Clockwise)

Preceding gene: 182678523

Following gene: 182678529

Centisome position: 41.98

GC content: 60.71

Gene sequence:

>957_bases
GTGGGCATCGATCGCGGAAACTCTGAATGTCTTGCCAAATCCTATGAACGCGGAAAAAGAGCCGGCGAAGCGCCGTGCGC
TCGTGGAACTGGCTGGTCCCCTTGCCCGCATCAGGGATACAATTCGACGCCGCTTCAAGGCGTCCGCATTCTCAGGACTG
AGGCGGTCCTTCACGACGTCCCCGTGCTTTACAAGCCGGGCGCGATATTCGTGCTGCAGGGGCGCAAGCAGGGCGTGCTT
GAAGGCGAAGTCTATCTCTACGATGAGGAGCACTATCTGGCGGTGTCGGTGCCGGTTCCGTTTCGAATGGAATCCGTGGC
CAGCCCCGAACGACCCCTGCTTGCAGTCTATGTCGAGTTCGACATGCGTCTGGCTGCCGAGATCGCCTCGGAAGTGGGCG
CGAGACATGCTAGATCGACGGTCGGCAAGGTGAAAAGTCTGGTATCGAGCAGAATGGAGCCGGCTATCGAGGATGTCGTG
CTGCGTCTGCTGCGGGCATTGCACGATCCTGTCGAGCTTACGATTCTGGGTTCAGGCATCCTGCGCGAACTGCATTACCG
GGTGCTCGTGGGCCCGCAAGGCGGTGCGATGATCTCAGCCTTGCAGCAGTGTGGCACGTCCGGGAGGATCGTGCAAAGCC
TCGCCCGGCTGCGCGAAACCTATAGTTCCGAGATTTTGGTCGCCGCGCTGGCAGGTGAAGCAGGCATGAGCGTTCCCTCC
TATCACGTGCATTTCAAGGCCCTGACGGGCAGCAGTCCGATACAATATGTGAAGGCGATGCGGCTCCACGAGGCACGGCT
GATGCTCGCGCGCCAGGACAAGACGATTGCGGAGGTCGCGGCATCGGTCGGCTACGCCAGTCCTGCCCAGTTCAGTCGAG
ACTTCAAACGACACTTCCGGCGTACGGCGTCGGAAGAGGCCGAATGGGTTCGCCGGCATCTCGGTGAGCTTGCTTGA

Upstream 100 bases:

>100_bases
AAGCCGGAATTCGCGCCGGTGATGAAGAAGGTCTTCTGTGGCATGTTGGACGTTCTCCTGTTGATCGGTCTATTGCTATT
GACTGATAATATTCAAACCT

Downstream 100 bases:

>100_bases
ACGTCTTGGCAGGAAATGGCCGCTTAGAAGCGAAAACGCGCCGCCAAATGTCTGCTGGGCGCTGTTGGTTATGTGCTCGC
CGCACACTTGCCGCGGCCGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MGIDRGNSECLAKSYERGKRAGEAPCARGTGWSPCPHQGYNSTPLQGVRILRTEAVLHDVPVLYKPGAIFVLQGRKQGVL
EGEVYLYDEEHYLAVSVPVPFRMESVASPERPLLAVYVEFDMRLAAEIASEVGARHARSTVGKVKSLVSSRMEPAIEDVV
LRLLRALHDPVELTILGSGILRELHYRVLVGPQGGAMISALQQCGTSGRIVQSLARLRETYSSEILVAALAGEAGMSVPS
YHVHFKALTGSSPIQYVKAMRLHEARLMLARQDKTIAEVAASVGYASPAQFSRDFKRHFRRTASEEAEWVRRHLGELA

Sequences:

>Translated_318_residues
MGIDRGNSECLAKSYERGKRAGEAPCARGTGWSPCPHQGYNSTPLQGVRILRTEAVLHDVPVLYKPGAIFVLQGRKQGVL
EGEVYLYDEEHYLAVSVPVPFRMESVASPERPLLAVYVEFDMRLAAEIASEVGARHARSTVGKVKSLVSSRMEPAIEDVV
LRLLRALHDPVELTILGSGILRELHYRVLVGPQGGAMISALQQCGTSGRIVQSLARLRETYSSEILVAALAGEAGMSVPS
YHVHFKALTGSSPIQYVKAMRLHEARLMLARQDKTIAEVAASVGYASPAQFSRDFKRHFRRTASEEAEWVRRHLGELA
>Mature_317_residues
GIDRGNSECLAKSYERGKRAGEAPCARGTGWSPCPHQGYNSTPLQGVRILRTEAVLHDVPVLYKPGAIFVLQGRKQGVLE
GEVYLYDEEHYLAVSVPVPFRMESVASPERPLLAVYVEFDMRLAAEIASEVGARHARSTVGKVKSLVSSRMEPAIEDVVL
RLLRALHDPVELTILGSGILRELHYRVLVGPQGGAMISALQQCGTSGRIVQSLARLRETYSSEILVAALAGEAGMSVPSY
HVHFKALTGSSPIQYVKAMRLHEARLMLARQDKTIAEVAASVGYASPAQFSRDFKRHFRRTASEEAEWVRRHLGELA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=272, Percent_Identity=35.2941176470588, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34943; Mature: 34811

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIDRGNSECLAKSYERGKRAGEAPCARGTGWSPCPHQGYNSTPLQGVRILRTEAVLHDV
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PVLYKPGAIFVLQGRKQGVLEGEVYLYDEEHYLAVSVPVPFRMESVASPERPLLAVYVEF
CCEECCCEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHCCCCCCCEEEEEEEH
DMRLAAEIASEVGARHARSTVGKVKSLVSSRMEPAIEDVVLRLLRALHDPVELTILGSGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECHHH
LRELHYRVLVGPQGGAMISALQQCGTSGRIVQSLARLRETYSSEILVAALAGEAGMSVPS
HHHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
YHVHFKALTGSSPIQYVKAMRLHEARLMLARQDKTIAEVAASVGYASPAQFSRDFKRHFR
EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
RTASEEAEWVRRHLGELA
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GIDRGNSECLAKSYERGKRAGEAPCARGTGWSPCPHQGYNSTPLQGVRILRTEAVLHDV
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PVLYKPGAIFVLQGRKQGVLEGEVYLYDEEHYLAVSVPVPFRMESVASPERPLLAVYVEF
CCEECCCEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHCCCCCCCEEEEEEEH
DMRLAAEIASEVGARHARSTVGKVKSLVSSRMEPAIEDVVLRLLRALHDPVELTILGSGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECHHH
LRELHYRVLVGPQGGAMISALQQCGTSGRIVQSLARLRETYSSEILVAALAGEAGMSVPS
HHHHHHEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
YHVHFKALTGSSPIQYVKAMRLHEARLMLARQDKTIAEVAASVGYASPAQFSRDFKRHFR
EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
RTASEEAEWVRRHLGELA
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]