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The map label for this gene is 182678416

Identifier: 182678416

GI number: 182678416

Start: 1642961

End: 1643611

Strand: Direct

Name: 182678416

Synonym: Bind_1433

Alternate gene names: NA

Gene position: 1642961-1643611 (Clockwise)

Preceding gene: 182678415

Following gene: 182678417

Centisome position: 39.4

GC content: 61.14

Gene sequence:

>651_bases
ATGCAGGATGACGGGTGTCGGCGCCTGACTTTGGTGGCGTCGGATGGCGAGACGACGCGAGATGGGACGAAGGCCATGCC
AGGGGACCTCGAGGCCGCACCATCGCGCGATCTCGACTGGACAATTCTCATGGCGCGCGCGCAGGACGGCGATACGGTCG
CCTATCTGCGACTTCTCCAGGAGATCACACCTTATCTCAGATCACTGGTCAGGCGATGGCACAAGGATCATTGGGACGTC
GAAGATACCGTGCAGGACATATTGCTGACCCTCCATTCGATCCGGCATACCTACGATCCTTTACGGCCGTTCGGTCCCTG
GCTTGTCGGCATCGCCAGTCGTCGCGCGATCGATCGGTTGCGTCGACGTGGCCGGCAGGCGCTGCGCGAGGCCCCGCTCA
CCGCCGAACATGAGGCGACCGTCACAGCGGCCGATAACAACGATGATGTGCTTGACAAGCATCGTCTGACTGAGGCTGTC
GGCAGCTTGCCGCTGATCCAACGGACGGCTGTCGATCTCCTCAAACTCAAGGAAATGTCTTTAAAGGAAGCATCCGACGC
GACCGGGCTCTCCATCGCGTCGCTTAAAATGGCGACCCAGCGGGCGCTCCGGACCTTGCGGACCTTGCTCTCGGATCGGG
GGGATTTGTGA

Upstream 100 bases:

>100_bases
GTTTGGTTCGCCGGGGGCAGGGCGGTGATGCCTCGCCGTCGCCAGATCGGGTCCCAGGGCGACTGCTTACGTGGATCCGC
TATCTTCAGGAGTTGGCGCG

Downstream 100 bases:

>100_bases
TGGACACGTCTGAGCTGATCCGCTCCCTCGCCACCAACGCTCCGCCGGTCAGGCGTCTTCGTCCTCCGCTCGTCCGCGCT
GTTGGATGGCTCCTGCTTGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-E Factor Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MQDDGCRRLTLVASDGETTRDGTKAMPGDLEAAPSRDLDWTILMARAQDGDTVAYLRLLQEITPYLRSLVRRWHKDHWDV
EDTVQDILLTLHSIRHTYDPLRPFGPWLVGIASRRAIDRLRRRGRQALREAPLTAEHEATVTAADNNDDVLDKHRLTEAV
GSLPLIQRTAVDLLKLKEMSLKEASDATGLSIASLKMATQRALRTLRTLLSDRGDL

Sequences:

>Translated_216_residues
MQDDGCRRLTLVASDGETTRDGTKAMPGDLEAAPSRDLDWTILMARAQDGDTVAYLRLLQEITPYLRSLVRRWHKDHWDV
EDTVQDILLTLHSIRHTYDPLRPFGPWLVGIASRRAIDRLRRRGRQALREAPLTAEHEATVTAADNNDDVLDKHRLTEAV
GSLPLIQRTAVDLLKLKEMSLKEASDATGLSIASLKMATQRALRTLRTLLSDRGDL
>Mature_216_residues
MQDDGCRRLTLVASDGETTRDGTKAMPGDLEAAPSRDLDWTILMARAQDGDTVAYLRLLQEITPYLRSLVRRWHKDHWDV
EDTVQDILLTLHSIRHTYDPLRPFGPWLVGIASRRAIDRLRRRGRQALREAPLTAEHEATVTAADNNDDVLDKHRLTEAV
GSLPLIQRTAVDLLKLKEMSLKEASDATGLSIASLKMATQRALRTLRTLLSDRGDL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24325; Mature: 24325

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDDGCRRLTLVASDGETTRDGTKAMPGDLEAAPSRDLDWTILMARAQDGDTVAYLRLLQ
CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
EITPYLRSLVRRWHKDHWDVEDTVQDILLTLHSIRHTYDPLRPFGPWLVGIASRRAIDRL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
RRRGRQALREAPLTAEHEATVTAADNNDDVLDKHRLTEAVGSLPLIQRTAVDLLKLKEMS
HHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LKEASDATGLSIASLKMATQRALRTLRTLLSDRGDL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQDDGCRRLTLVASDGETTRDGTKAMPGDLEAAPSRDLDWTILMARAQDGDTVAYLRLLQ
CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
EITPYLRSLVRRWHKDHWDVEDTVQDILLTLHSIRHTYDPLRPFGPWLVGIASRRAIDRL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
RRRGRQALREAPLTAEHEATVTAADNNDDVLDKHRLTEAVGSLPLIQRTAVDLLKLKEMS
HHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LKEASDATGLSIASLKMATQRALRTLRTLLSDRGDL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA