| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is dltE [H]
Identifier: 182678002
GI number: 182678002
Start: 1166025
End: 1166798
Strand: Direct
Name: dltE [H]
Synonym: Bind_1016
Alternate gene names: 182678002
Gene position: 1166025-1166798 (Clockwise)
Preceding gene: 182678000
Following gene: 182678006
Centisome position: 27.96
GC content: 55.04
Gene sequence:
>774_bases ATGAAAATGACCAATCGAACAGTCTTGATTACCGGCGGCACCAGCGGGATCGGCCTCACGCTCGCCAATAGCCTCGTCGA GCGCGGAAACATCGTGATTGTCACAGGCCGTGATCAGAGCAAGTTGACTTCTGTTTCGAAGGCCTTTCCGAGGCTGTACG TTGTTCGGAGCGATGTCACGAAGCCGGACGACATTCGGAGACTTTACGAGGAGATTTTATCCCGCTTTCCGAAGCTGGAT GTTCTCGTCAATAACGCGGGCATAATGCGGAATCTCAAGCTGGTGGAGCCACACAGTCTCGAAGACATTACGCGTGAGGT CGATATTTTGCTGACTGGAGCAATCCGAATGGTGCAGCAATTCCTGCCGCATCTGCTGCAACGTGACGAAGCCGCGATCG TCAACGTATCCTCGGGCCTCGCTTTCGTCCCGATGCCTGTGTCGCCAGTCTATTCCGCCGCGAAAGCAGCCCTGCACGCC TACACGCAAAGCCTGCGGGCGCAACTTTCCGACACGTCGATCAACGTCATTGAGTTGGCTCCGCCACCAGTTGAAACGGA ATTGTTTAGAGGTGAGTTTGCCGAGGAGATGAAGGGCCGGAGCGCTATGGCACCCGACAAACTGGTCAAACAAACGTTAG CGGCGATCGAAGCCGGGAGAACGGAAATTAGGCCAGGCGCTGCGAACATTCTCAAGATCGCAAGCCGGATCGCACCGGAT TTCATATTCAAGCAAATGGTGAAACTTGGGCAGCCGAGGAACCGTCCGATCTAG
Upstream 100 bases:
>100_bases GCTCTCCATTTGGTAAGTATAGAACTTTTCGGTGCCTTCTTCCCTTTGGAAAGTATGAGCGTCAAAACTACCTGAATGCA ACGGACTTCAGGTATTCACT
Downstream 100 bases:
>100_bases CTAGTCCTGGCGGACTCAACCCACCCACTTTCTGATCTTGCCACCCTGAACGCTCGGCTTTAAGAACGGTGCATCGAGCA CTGGGCCAGACTTAGCATGG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MKMTNRTVLITGGTSGIGLTLANSLVERGNIVIVTGRDQSKLTSVSKAFPRLYVVRSDVTKPDDIRRLYEEILSRFPKLD VLVNNAGIMRNLKLVEPHSLEDITREVDILLTGAIRMVQQFLPHLLQRDEAAIVNVSSGLAFVPMPVSPVYSAAKAALHA YTQSLRAQLSDTSINVIELAPPPVETELFRGEFAEEMKGRSAMAPDKLVKQTLAAIEAGRTEIRPGAANILKIASRIAPD FIFKQMVKLGQPRNRPI
Sequences:
>Translated_257_residues MKMTNRTVLITGGTSGIGLTLANSLVERGNIVIVTGRDQSKLTSVSKAFPRLYVVRSDVTKPDDIRRLYEEILSRFPKLD VLVNNAGIMRNLKLVEPHSLEDITREVDILLTGAIRMVQQFLPHLLQRDEAAIVNVSSGLAFVPMPVSPVYSAAKAALHA YTQSLRAQLSDTSINVIELAPPPVETELFRGEFAEEMKGRSAMAPDKLVKQTLAAIEAGRTEIRPGAANILKIASRIAPD FIFKQMVKLGQPRNRPI >Mature_257_residues MKMTNRTVLITGGTSGIGLTLANSLVERGNIVIVTGRDQSKLTSVSKAFPRLYVVRSDVTKPDDIRRLYEEILSRFPKLD VLVNNAGIMRNLKLVEPHSLEDITREVDILLTGAIRMVQQFLPHLLQRDEAAIVNVSSGLAFVPMPVSPVYSAAKAALHA YTQSLRAQLSDTSINVIELAPPPVETELFRGEFAEEMKGRSAMAPDKLVKQTLAAIEAGRTEIRPGAANILKIASRIAPD FIFKQMVKLGQPRNRPI
Specific function: Unknown
COG id: COG3967
COG function: function code M; Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4557649, Length=253, Percent_Identity=27.6679841897233, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7706318, Length=206, Percent_Identity=27.6699029126214, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI226371731, Length=196, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=30.3482587064677, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI7657478, Length=205, Percent_Identity=33.1707317073171, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI7705855, Length=186, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI109715829, Length=199, Percent_Identity=27.6381909547739, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI4504503, Length=186, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI40254992, Length=195, Percent_Identity=25.6410256410256, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI59889578, Length=183, Percent_Identity=26.775956284153, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI32483357, Length=211, Percent_Identity=29.8578199052133, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4758504, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI40548397, Length=225, Percent_Identity=26.2222222222222, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI214010158, Length=225, Percent_Identity=26.2222222222222, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI214010156, Length=225, Percent_Identity=26.2222222222222, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI22758144, Length=225, Percent_Identity=26.2222222222222, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1787820, Length=175, Percent_Identity=29.1428571428571, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=27.4611398963731, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786812, Length=190, Percent_Identity=28.9473684210526, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=27.0833333333333, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI87082100, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789208, Length=190, Percent_Identity=25.2631578947368, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI2367175, Length=189, Percent_Identity=27.5132275132275, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17538486, Length=220, Percent_Identity=31.3636363636364, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=31.6326530612245, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17562904, Length=200, Percent_Identity=33, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI72000259, Length=200, Percent_Identity=32, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17570069, Length=187, Percent_Identity=32.0855614973262, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI115534694, Length=203, Percent_Identity=30.5418719211823, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=28.996282527881, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17560676, Length=206, Percent_Identity=29.126213592233, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17551412, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560150, Length=217, Percent_Identity=29.4930875576037, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17563726, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI72001658, Length=233, Percent_Identity=28.755364806867, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17561402, Length=205, Percent_Identity=23.9024390243902, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71997402, Length=179, Percent_Identity=28.4916201117318, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=26.1780104712042, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.1954887218045, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=27.8810408921933, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193204405, Length=207, Percent_Identity=27.0531400966184, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17559104, Length=196, Percent_Identity=29.0816326530612, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17544670, Length=204, Percent_Identity=26.9607843137255, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17558994, Length=212, Percent_Identity=31.1320754716981, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17559964, Length=207, Percent_Identity=29.4685990338164, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17538182, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646214, Length=195, Percent_Identity=28.7179487179487, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=27.536231884058, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17559962, Length=210, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560220, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=33.9901477832512, Blast_Score=98, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6322227, Length=263, Percent_Identity=26.2357414448669, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320089, Length=192, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=187, Percent_Identity=24.5989304812834, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397609, Length=203, Percent_Identity=32.0197044334975, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=30.2083333333333, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI281364494, Length=229, Percent_Identity=26.6375545851528, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI24644339, Length=232, Percent_Identity=30.1724137931034, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI21358495, Length=267, Percent_Identity=26.5917602996255, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI21355319, Length=207, Percent_Identity=26.5700483091787, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI24580925, Length=215, Percent_Identity=27.4418604651163, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI28571526, Length=226, Percent_Identity=26.1061946902655, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357041, Length=227, Percent_Identity=27.7533039647577, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24648693, Length=211, Percent_Identity=25.1184834123223, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355889, Length=211, Percent_Identity=25.1184834123223, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24584744, Length=192, Percent_Identity=28.125, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=28.125, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI221331216, Length=231, Percent_Identity=25.974025974026, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI221331218, Length=230, Percent_Identity=26.5217391304348, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24665243, Length=230, Percent_Identity=26.5217391304348, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24665247, Length=231, Percent_Identity=25.974025974026, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24643142, Length=198, Percent_Identity=30.8080808080808, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281364892, Length=172, Percent_Identity=31.3953488372093, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355631, Length=184, Percent_Identity=25.5434782608696, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI161076933, Length=229, Percent_Identity=25.764192139738, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24584748, Length=229, Percent_Identity=25.764192139738, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=24.2574257425743, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641388, Length=205, Percent_Identity=25.8536585365854, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI17737361, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24649181, Length=236, Percent_Identity=25, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28264; Mature: 28264
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMTNRTVLITGGTSGIGLTLANSLVERGNIVIVTGRDQSKLTSVSKAFPRLYVVRSDVT CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHEEEEEECCCC KPDDIRRLYEEILSRFPKLDVLVNNAGIMRNLKLVEPHSLEDITREVDILLTGAIRMVQQ CCHHHHHHHHHHHHHCCCEEEEECCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHH FLPHLLQRDEAAIVNVSSGLAFVPMPVSPVYSAAKAALHAYTQSLRAQLSDTSINVIELA HHHHHHCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC PPPVETELFRGEFAEEMKGRSAMAPDKLVKQTLAAIEAGRTEIRPGAANILKIASRIAPD CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHH FIFKQMVKLGQPRNRPI HHHHHHHHHCCCCCCCC >Mature Secondary Structure MKMTNRTVLITGGTSGIGLTLANSLVERGNIVIVTGRDQSKLTSVSKAFPRLYVVRSDVT CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHEEEEEECCCC KPDDIRRLYEEILSRFPKLDVLVNNAGIMRNLKLVEPHSLEDITREVDILLTGAIRMVQQ CCHHHHHHHHHHHHHCCCEEEEECCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHH FLPHLLQRDEAAIVNVSSGLAFVPMPVSPVYSAAKAALHAYTQSLRAQLSDTSINVIELA HHHHHHCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC PPPVETELFRGEFAEEMKGRSAMAPDKLVKQTLAAIEAGRTEIRPGAANILKIASRIAPD CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHH FIFKQMVKLGQPRNRPI HHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377; 7797557 [H]