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The map label for this gene is 182677930

Identifier: 182677930

GI number: 182677930

Start: 1078149

End: 1078946

Strand: Direct

Name: 182677930

Synonym: Bind_0940

Alternate gene names: NA

Gene position: 1078149-1078946 (Clockwise)

Preceding gene: 182677929

Following gene: 182677933

Centisome position: 25.85

GC content: 56.64

Gene sequence:

>798_bases
ATGCCGGCGAAACGGGAAAAAATCTTCAATATTCCGCCGGTCATTCTCACGCTTCTTGTCGTGCTTTTTGCCATACAGGC
TCTTTGCGACTGGCTTTCACCCGAGCAATTCCTGCGATTGTTGCAAAATTTCTCCTTTGTTCCTGGCCGTTTCACCTTCC
AGATCGATCCCGACCGGGTGACGGATGTGCTGAATGCGCTGGCGCGTGAAGACGAACTCAAGATGCAGGCGGCCTTGTTC
TTCCTGAACAATGGCGAGCCGCATTATTGGACCGTCTTGACCTATGCTTTTCTGCATGGCGGCTGGGCGCATGTCGGCAT
GAACGGCCTGTGGTTTGGCGCTTTTGGCTCGGCAGTTGCGCGGCGGTTTGGAAGCGGCCGTTTTCTTCTCTTTTGCGCTG
GTGGTGCAATCGCTGGAGCCTTCATGCATTTTCTGACGCATATGGCGGATTTACAGCCGATTGTCGGCGCCTCGGCAGTG
GTCTCGGCAGCCATGGCGGCGGCGATCCGCTTCGTGTTTCAGCCGGGCGCGCCGCTTGGCGGCACCCTGGGGTTCTCCGA
TGTCGAAGGGGATGACCTTTATCGTCAGCCAGCGCTTCCCTTGCGTGATGTGTTCTCGGATCGGCAGGCGCTGACCTTCT
TGGCCTTCTGGTTCCTGTCCAATTTCCTATTTGGCGTCATGCCTGGCTCGTTAGGCCTCACCGATGCGACGATTGCCTGG
GAGGCCCACATCGGCGGCTTTCTGTTTGGGCTCATTGCATTTCGTTGGTTTGATCCCTCCGCGAAGATCGTTCATTAA

Upstream 100 bases:

>100_bases
TGAACCCTATTCGATGCTCTATCTTTTCTGAAAACGCATCAGATTGGCCCCAAAGCGGGAAACCACTTTTGGGTCTGATG
CTCTAACGGGTACGAGATTC

Downstream 100 bases:

>100_bases
ATCAGATGCATGAGCGATGCTTTACGTTTTATCGACGGTCGTCTTGGGCATGATCGACTCGAAGCGACGATCGTTCCGCC
AGGACTGATTCCACGAAAGC

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Rhombiod Family Transmembrane Protein; Peptidase Protein; S54 Family Peptidase; Peptidase

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MPAKREKIFNIPPVILTLLVVLFAIQALCDWLSPEQFLRLLQNFSFVPGRFTFQIDPDRVTDVLNALAREDELKMQAALF
FLNNGEPHYWTVLTYAFLHGGWAHVGMNGLWFGAFGSAVARRFGSGRFLLFCAGGAIAGAFMHFLTHMADLQPIVGASAV
VSAAMAAAIRFVFQPGAPLGGTLGFSDVEGDDLYRQPALPLRDVFSDRQALTFLAFWFLSNFLFGVMPGSLGLTDATIAW
EAHIGGFLFGLIAFRWFDPSAKIVH

Sequences:

>Translated_265_residues
MPAKREKIFNIPPVILTLLVVLFAIQALCDWLSPEQFLRLLQNFSFVPGRFTFQIDPDRVTDVLNALAREDELKMQAALF
FLNNGEPHYWTVLTYAFLHGGWAHVGMNGLWFGAFGSAVARRFGSGRFLLFCAGGAIAGAFMHFLTHMADLQPIVGASAV
VSAAMAAAIRFVFQPGAPLGGTLGFSDVEGDDLYRQPALPLRDVFSDRQALTFLAFWFLSNFLFGVMPGSLGLTDATIAW
EAHIGGFLFGLIAFRWFDPSAKIVH
>Mature_264_residues
PAKREKIFNIPPVILTLLVVLFAIQALCDWLSPEQFLRLLQNFSFVPGRFTFQIDPDRVTDVLNALAREDELKMQAALFF
LNNGEPHYWTVLTYAFLHGGWAHVGMNGLWFGAFGSAVARRFGSGRFLLFCAGGAIAGAFMHFLTHMADLQPIVGASAVV
SAAMAAAIRFVFQPGAPLGGTLGFSDVEGDDLYRQPALPLRDVFSDRQALTFLAFWFLSNFLFGVMPGSLGLTDATIAWE
AHIGGFLFGLIAFRWFDPSAKIVH

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29197; Mature: 29066

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKREKIFNIPPVILTLLVVLFAIQALCDWLSPEQFLRLLQNFSFVPGRFTFQIDPDRV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECHHHH
TDVLNALAREDELKMQAALFFLNNGEPHYWTVLTYAFLHGGWAHVGMNGLWFGAFGSAVA
HHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCHHHHCCCCEEHHHHHHHHH
RRFGSGRFLLFCAGGAIAGAFMHFLTHMADLQPIVGASAVVSAAMAAAIRFVFQPGAPLG
HHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GTLGFSDVEGDDLYRQPALPLRDVFSDRQALTFLAFWFLSNFLFGVMPGSLGLTDATIAW
CCCCCCCCCCCHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEE
EAHIGGFLFGLIAFRWFDPSAKIVH
HHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PAKREKIFNIPPVILTLLVVLFAIQALCDWLSPEQFLRLLQNFSFVPGRFTFQIDPDRV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECHHHH
TDVLNALAREDELKMQAALFFLNNGEPHYWTVLTYAFLHGGWAHVGMNGLWFGAFGSAVA
HHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCHHHHCCCCEEHHHHHHHHH
RRFGSGRFLLFCAGGAIAGAFMHFLTHMADLQPIVGASAVVSAAMAAAIRFVFQPGAPLG
HHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GTLGFSDVEGDDLYRQPALPLRDVFSDRQALTFLAFWFLSNFLFGVMPGSLGLTDATIAW
CCCCCCCCCCCHHHCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEE
EAHIGGFLFGLIAFRWFDPSAKIVH
HHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA