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The map label for this gene is ligT [C]

Identifier: 182677825

GI number: 182677825

Start: 930407

End: 930940

Strand: Direct

Name: ligT [C]

Synonym: Bind_0832

Alternate gene names: 182677825

Gene position: 930407-930940 (Clockwise)

Preceding gene: 182677824

Following gene: 182677827

Centisome position: 22.31

GC content: 60.11

Gene sequence:

>534_bases
ATGCCGCGTCTGTTCACTGGCCTCGAAATCCCGTCCGAACTGGCTCAGGATCTCTCCCTGCTGCGCGGCGGTCTGTCCGG
CGCCCGCTGGATCGATGCCGAAAATTATCACCTCACCTTGCGTTTCATCGGCGATATCGACGATGCCATGGCGCGTGATG
TCACGGCGACGCTCGGCCTTATTCAGAAATCATCTTTCCAGGTCACGCTTGAAAGTCTGGATTCATTCGGCGGTGGTAAA
CCTCGTGCGATTATCGCCAAGGCTCGGAGCAATCCGCTTCTGAATGAACTTCAGGCCGAACAGGAGCGGCTGCTGCGGCG
TATCGGCCTGCCGCCGGAGCCGCGCAAATTTACGCCCCATGTCACGCTGGCGCGGCTGCGTGCGAGCCCTGCTACGGCCG
TCGCCCATTATTTGGCCGAACGTGGCTTTTTTGCCTCACGGCACTTCGAGGCGCGGCGTTTCGTGCTATTTTCCTCACGG
GCTTCGACAGGCGGTGGTCCCTATCAGGTCGAGGCGGCTTATCCCTTGGGTTGA

Upstream 100 bases:

>100_bases
CGTGCAAAGCTTGGGAAGTTGACCGCCGGAAACCGATCCTGGCGCTCTCGATCGGCTCGATTCGGCTTTGGCTTGGTTTG
CGCGTATTGGGAGGTGAGGC

Downstream 100 bases:

>100_bases
GGACGCTCTCCTTAAGAATCTTTCCTTGAGGGGGTCTCAATGACGTATCTTGCCGTGGCGCTGGAGGCGATGGTGCAGGA
TCATCGGCATGCCGCCTCGT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; ABC Transporter; 2 5 RNA Ligase

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MPRLFTGLEIPSELAQDLSLLRGGLSGARWIDAENYHLTLRFIGDIDDAMARDVTATLGLIQKSSFQVTLESLDSFGGGK
PRAIIAKARSNPLLNELQAEQERLLRRIGLPPEPRKFTPHVTLARLRASPATAVAHYLAERGFFASRHFEARRFVLFSSR
ASTGGGPYQVEAAYPLG

Sequences:

>Translated_177_residues
MPRLFTGLEIPSELAQDLSLLRGGLSGARWIDAENYHLTLRFIGDIDDAMARDVTATLGLIQKSSFQVTLESLDSFGGGK
PRAIIAKARSNPLLNELQAEQERLLRRIGLPPEPRKFTPHVTLARLRASPATAVAHYLAERGFFASRHFEARRFVLFSSR
ASTGGGPYQVEAAYPLG
>Mature_176_residues
PRLFTGLEIPSELAQDLSLLRGGLSGARWIDAENYHLTLRFIGDIDDAMARDVTATLGLIQKSSFQVTLESLDSFGGGKP
RAIIAKARSNPLLNELQAEQERLLRRIGLPPEPRKFTPHVTLARLRASPATAVAHYLAERGFFASRHFEARRFVLFSSRA
STGGGPYQVEAAYPLG

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 19476; Mature: 19344

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLFTGLEIPSELAQDLSLLRGGLSGARWIDAENYHLTLRFIGDIDDAMARDVTATLGL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHHHHH
IQKSSFQVTLESLDSFGGGKPRAIIAKARSNPLLNELQAEQERLLRRIGLPPEPRKFTPH
HHCCCCEEEHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VTLARLRASPATAVAHYLAERGFFASRHFEARRFVLFSSRASTGGGPYQVEAAYPLG
HHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCC
>Mature Secondary Structure 
PRLFTGLEIPSELAQDLSLLRGGLSGARWIDAENYHLTLRFIGDIDDAMARDVTATLGL
CCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHHHHH
IQKSSFQVTLESLDSFGGGKPRAIIAKARSNPLLNELQAEQERLLRRIGLPPEPRKFTPH
HHCCCCEEEHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VTLARLRASPATAVAHYLAERGFFASRHFEARRFVLFSSRASTGGGPYQVEAAYPLG
HHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA