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The map label for this gene is 17548086

Identifier: 17548086

GI number: 17548086

Start: 3628670

End: 3629947

Strand: Reverse

Name: 17548086

Synonym: RSc3369

Alternate gene names: NA

Gene position: 3629947-3628670 (Counterclockwise)

Preceding gene: 17548087

Following gene: 17548080

Centisome position: 97.67

GC content: 67.84

Gene sequence:

>1278_bases
ATGCCGCCCGTCCTGCCGTCGATCCTGAGGTGCTTCCGCCCGGCCGTCTCGCGCCCGGAGGCGGAAACCGCGGCCCCGTC
GTCGTCCCAGGAGCACAACCGGCCGGGCTCGCCGGAGCGCAGCCCCCGCCGGGCGCCAGCTGCCCTGCAAGGCCTGACGC
CACGGGCCGGATCGTCGCGCCGGCAAGCGGCACCCGAGGCACCGGCCGGGCCGGCGCGCTTCCTGACCGATGGCGAACGC
CAGTTCGGCGGCTATCTGATGGCCCGGGATGTCGACCAGCGTCCCGTCCACGGTGAACCACTGGACACATTGCGCAGCGC
CAACGAAACACTGCTGCAAACCCGCCGGATACTGACGCACGGGCGCGGCAACGTGGAGGACGATATCGACGCCACCCATG
GATTGAGCACGCACATCGCGCAGGGTGGCCGCTCCATCCAGGAATCCATGTGGCGTGCCCATCCCAAGCCTGTCGTATGG
GCCGCCATCGCAATGGTGGCAGGGGCGGGGAACTGCGGCGAACACGCCGATCTGGCCACCTTCCTCCACGCCGCGAAACT
GAAGGAAGGGGAAGCGGTCGACAACGTCCATATCGACGACTTCGACCACTTCTGGGCAATCGTGCACCGTGCCGAACCGG
ATCTGGAACGCGACGTCTACATCGACGCATGGGGCAAGGGGCCGGCGATCTTTGCGGTGGACGGCATGATGACCTACCGT
CCCGGGGAACGGAGAACGAAGTTCGGCTACGACAAGGCTTCCGGCGAGGAAGCCCACGCCGACATGGAAATGCTGGCGAC
CGTGCTGGCGACACGGATGCGCGGCGGCATCAGCAATACCATGCGCCGGCTCGGCCCGGACTATCGCTACCCGCCCGAGC
GTGTCTGGGCGGTAACGCCCATCGTGGCGCAACGATTCACGGATCGCGTCAAAGCAGAAATGTCGAAGCCGGCCGACCTG
GGCAAGCTCATGGTGCCCCCGGACTGTGCCACCCCTTCCTCCGTCGAGCCGCCGGTCACCAACGAGCGCCTGATGCAACC
GCTGCGGCACGAGATCCACGCCACGCGCATCGCCAGGACGCTCGGCGCGCACAGCGTCGACACCATGGCGCATGCTGCCC
GACGCATCGTTGCAGTCGCATCCGATCTGCAGGGGTACCCCATCGAGGCGCATCCTCTCCAGGCCAAGAAGGATGCAGAG
GATATTGCCGCCGCTGAACGGCGCCGCGCCCGTCGCGCTGCCCTGGGCAAAGGCGAGCCGCCCGCCACGGAAAGCTGA

Upstream 100 bases:

>100_bases
GATGTTGCCTATGCTGGCCAGGCCGCCATCCCGCTCTGGCGCGTCGCGCGTACGCGAACCCAGCGTCGCGCGTACGCGAA
CCCACACTGAGCCGCCTGCC

Downstream 100 bases:

>100_bases
CGGTCGCCCGCGCTCAGCTCGCCTGCGCCTCCAGCGTAAAGCCGGCCCCGTCGTCCTGGCCGAGCAGCCGCACCAGCGTC
GGCATGGCGTCCTGCAGCTG

Product: AVRPPHE avirulence protein

Products: NA

Alternate protein names: Type III Effector AvrPphE Family; AVRPPHE Avirulence Protein; Type III Effector Protein; Hypothethical Protein

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MPPVLPSILRCFRPAVSRPEAETAAPSSSQEHNRPGSPERSPRRAPAALQGLTPRAGSSRRQAAPEAPAGPARFLTDGER
QFGGYLMARDVDQRPVHGEPLDTLRSANETLLQTRRILTHGRGNVEDDIDATHGLSTHIAQGGRSIQESMWRAHPKPVVW
AAIAMVAGAGNCGEHADLATFLHAAKLKEGEAVDNVHIDDFDHFWAIVHRAEPDLERDVYIDAWGKGPAIFAVDGMMTYR
PGERRTKFGYDKASGEEAHADMEMLATVLATRMRGGISNTMRRLGPDYRYPPERVWAVTPIVAQRFTDRVKAEMSKPADL
GKLMVPPDCATPSSVEPPVTNERLMQPLRHEIHATRIARTLGAHSVDTMAHAARRIVAVASDLQGYPIEAHPLQAKKDAE
DIAAAERRRARRAALGKGEPPATES

Sequences:

>Translated_425_residues
MPPVLPSILRCFRPAVSRPEAETAAPSSSQEHNRPGSPERSPRRAPAALQGLTPRAGSSRRQAAPEAPAGPARFLTDGER
QFGGYLMARDVDQRPVHGEPLDTLRSANETLLQTRRILTHGRGNVEDDIDATHGLSTHIAQGGRSIQESMWRAHPKPVVW
AAIAMVAGAGNCGEHADLATFLHAAKLKEGEAVDNVHIDDFDHFWAIVHRAEPDLERDVYIDAWGKGPAIFAVDGMMTYR
PGERRTKFGYDKASGEEAHADMEMLATVLATRMRGGISNTMRRLGPDYRYPPERVWAVTPIVAQRFTDRVKAEMSKPADL
GKLMVPPDCATPSSVEPPVTNERLMQPLRHEIHATRIARTLGAHSVDTMAHAARRIVAVASDLQGYPIEAHPLQAKKDAE
DIAAAERRRARRAALGKGEPPATES
>Mature_424_residues
PPVLPSILRCFRPAVSRPEAETAAPSSSQEHNRPGSPERSPRRAPAALQGLTPRAGSSRRQAAPEAPAGPARFLTDGERQ
FGGYLMARDVDQRPVHGEPLDTLRSANETLLQTRRILTHGRGNVEDDIDATHGLSTHIAQGGRSIQESMWRAHPKPVVWA
AIAMVAGAGNCGEHADLATFLHAAKLKEGEAVDNVHIDDFDHFWAIVHRAEPDLERDVYIDAWGKGPAIFAVDGMMTYRP
GERRTKFGYDKASGEEAHADMEMLATVLATRMRGGISNTMRRLGPDYRYPPERVWAVTPIVAQRFTDRVKAEMSKPADLG
KLMVPPDCATPSSVEPPVTNERLMQPLRHEIHATRIARTLGAHSVDTMAHAARRIVAVASDLQGYPIEAHPLQAKKDAED
IAAAERRRARRAALGKGEPPATES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46490; Mature: 46359

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPVLPSILRCFRPAVSRPEAETAAPSSSQEHNRPGSPERSPRRAPAALQGLTPRAGSSR
CCCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCH
RQAAPEAPAGPARFLTDGERQFGGYLMARDVDQRPVHGEPLDTLRSANETLLQTRRILTH
HHCCCCCCCCCHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GRGNVEDDIDATHGLSTHIAQGGRSIQESMWRAHPKPVVWAAIAMVAGAGNCGEHADLAT
CCCCCCCCCHHHCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHH
FLHAAKLKEGEAVDNVHIDDFDHFWAIVHRAEPDLERDVYIDAWGKGPAIFAVDGMMTYR
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCEEEEC
PGERRTKFGYDKASGEEAHADMEMLATVLATRMRGGISNTMRRLGPDYRYPPERVWAVTP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHEEHHH
IVAQRFTDRVKAEMSKPADLGKLMVPPDCATPSSVEPPVTNERLMQPLRHEIHATRIART
HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LGAHSVDTMAHAARRIVAVASDLQGYPIEAHPLQAKKDAEDIAAAERRRARRAALGKGEP
HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PATES
CCCCC
>Mature Secondary Structure 
PPVLPSILRCFRPAVSRPEAETAAPSSSQEHNRPGSPERSPRRAPAALQGLTPRAGSSR
CCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCH
RQAAPEAPAGPARFLTDGERQFGGYLMARDVDQRPVHGEPLDTLRSANETLLQTRRILTH
HHCCCCCCCCCHHHHCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GRGNVEDDIDATHGLSTHIAQGGRSIQESMWRAHPKPVVWAAIAMVAGAGNCGEHADLAT
CCCCCCCCCHHHCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHH
FLHAAKLKEGEAVDNVHIDDFDHFWAIVHRAEPDLERDVYIDAWGKGPAIFAVDGMMTYR
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEECCEEEEC
PGERRTKFGYDKASGEEAHADMEMLATVLATRMRGGISNTMRRLGPDYRYPPERVWAVTP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHEEHHH
IVAQRFTDRVKAEMSKPADLGKLMVPPDCATPSSVEPPVTNERLMQPLRHEIHATRIART
HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LGAHSVDTMAHAARRIVAVASDLQGYPIEAHPLQAKKDAEDIAAAERRRARRAALGKGEP
HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PATES
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA