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The map label for this gene is yafC [H]

Identifier: 17548051

GI number: 17548051

Start: 3596026

End: 3596922

Strand: Reverse

Name: yafC [H]

Synonym: RSc3334

Alternate gene names: 17548051

Gene position: 3596922-3596026 (Counterclockwise)

Preceding gene: 17548053

Following gene: 17548048

Centisome position: 96.78

GC content: 70.79

Gene sequence:

>897_bases
ATGGTGAATCCGGAACCGGGCTGGGAGCTGTATCGGACGTTTCTCGCCGTCGTGCGGGAAGGTTCGCTGTCGGGCGCGGC
GCGCGCGCTGGGGCTGACCCAGCCCACCGCCGGCCGCCATGTCGATGCGCTGGAGCGTGCGCTCGGCTTCGCGCTGTTCA
TCCGCACCCAGCAGGGCTTGAGTCCGACCGAGGCGGCGCTGGCGCTGCGGCCCTATGCGGAATCGCTTGAGTCGACCAGC
GCAGCGCTGCTGCGTGCCGCCTCCAGCCAGGGAGAAGGCGTGCGCGGCACGGTGCGCATCACCGCCAGCGAAGTGGTGAC
GGCGGAAGTGCTGCCCGCCATCCTCGCCGACCTGCACGCCGCCTATCCCGGCCTCATCCTCGAACTGGTGCCCAGCAACC
GCCTCGAAGACCTGCTGCGCCGCGACGCCGACATCGCCGTGCGGATGCAGCGCCCCAGCCAGGGCGTGCTGGTCGCGCGG
CACATCGGCGGCATCGAGCTGGGGGTGCACGCGCATCGCCGCTACCTCGAGCGTCGCGGCACCCCGGCCACGCTCGACGA
CCTGGCCGGCCACGCATTGATCGGCTACGACAAGGAGACCGCCTTCATCCGCGGCATGAAGGGGCAGGTCCCGTGGATGC
GTCGCGACCGCTTCGCGCTGCGCACCGACAGCGATCTGGCCGGGTTGGCCGCGTTGCGCGCGGGCTTCGGCATTGGTATC
TGCCAGGTCGGGCTGGCGCGGCGCGATCCCGACCTGGTCCGGCTGTTCGCCGACGACGTGGCGCCCGTGCTCGACACCTG
GCTCGCCATGCACGAAGACCTGCGCGAGAGTCTGCGCTGTCGCGTGGTCTTCGAAGCGCTGGCGGCGGGGCTGCTCCGTT
ATGTCAACGGTGATTGA

Upstream 100 bases:

>100_bases
GGCTGTTCTCCAGTCGATGCGCGTTGCGATGGAGGCATTCTGGATGGGCGTACCATTCCATGGAATTGTTGATGATGGTT
GATCGGCTATACGATTTTGT

Downstream 100 bases:

>100_bases
GCGGCCGGTTCACCCGCGTTGCCGCAGGGGGTCGAGCAGGCCTTTCAGGCCGTTGTGGTCCAGCTCCTGCATCAGCGCCA
GCAACCGCCCGATCTGCCCC

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MVNPEPGWELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAALALRPYAESLESTS
AALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYPGLILELVPSNRLEDLLRRDADIAVRMQRPSQGVLVAR
HIGGIELGVHAHRRYLERRGTPATLDDLAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGI
CQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLRYVNGD

Sequences:

>Translated_298_residues
MVNPEPGWELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAALALRPYAESLESTS
AALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYPGLILELVPSNRLEDLLRRDADIAVRMQRPSQGVLVAR
HIGGIELGVHAHRRYLERRGTPATLDDLAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGI
CQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLRYVNGD
>Mature_298_residues
MVNPEPGWELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAALALRPYAESLESTS
AALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYPGLILELVPSNRLEDLLRRDADIAVRMQRPSQGVLVAR
HIGGIELGVHAHRRYLERRGTPATLDDLAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGI
CQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLRYVNGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=28.0701754385965, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=131, Percent_Identity=33.587786259542, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693193, Length=243, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787128, Length=191, Percent_Identity=27.7486910994764, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=229, Percent_Identity=26.2008733624454, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32357; Mature: 32357

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNPEPGWELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGL
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEECCCC
SPTEAALALRPYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH
AYPGLILELVPSNRLEDLLRRDADIAVRMQRPSQGVLVARHIGGIELGVHAHRRYLERRG
HCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCEEEHHHHHHHHHHHCC
TPATLDDLAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGI
CCCCHHHHCCCEEECCCCCHHHHCCCCCCCCCHHCCCEEECCCCCHHHHHHHHHCCCHHH
CQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLRYVNGD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVNPEPGWELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGL
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEECCCC
SPTEAALALRPYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH
AYPGLILELVPSNRLEDLLRRDADIAVRMQRPSQGVLVARHIGGIELGVHAHRRYLERRG
HCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCEEEHHHHHHHHHHHCC
TPATLDDLAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGI
CCCCHHHHCCCEEECCCCCHHHHCCCCCCCCCHHCCCEEECCCCCHHHHHHHHHCCCHHH
CQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLRYVNGD
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]