Click here to switch to the map view.

The map label for this gene is soxF [H]

Identifier: 17547979

GI number: 17547979

Start: 3515107

End: 3516402

Strand: Reverse

Name: soxF [H]

Synonym: RSc3262

Alternate gene names: 17547979

Gene position: 3516402-3515107 (Counterclockwise)

Preceding gene: 17547980

Following gene: 17547978

Centisome position: 94.62

GC content: 72.07

Gene sequence:

>1296_bases
ATGAGCGGCTCCCGCTTTCGCAAGGACCGGCGCGCCACGCTGCGCGCCATCGGGGCGACCGCGCTGGCCGGACCGCTGGC
GGCCTGCGCCTCGCTGCCGAGCATACGCAATGCGCGGGTGGTGGTGGTCGGCGGCGGGTACGGCGGGGCGACGGCGGCCA
AATATGTGCGCGTGTTCTCCGGCGGGCGCGTCGACGTGACGCTGGTCGAACCCAGCGCGGCCTTCGTATCGTGCCCGCTG
TCCAATCTGGTGCTGTCGGGCGACCGCGATCTCGCCTCGCTGACGGTGCCGTATGACGCGCTGGTCGCGCGCCACGGCGT
GCGCTGGGTACGCGACCGCGCCACGGCCATCGACATCGGCGCCCGGCAGGTGCGCCTGGCCGGCGGCGGCACGCTGGATT
ACGACCGGCTGATCCTGTCGCCGGGCATCGACTTCGTGCCGGGCGCGATCCCCGGCCTGGCCGACGCCGCCACCGACGCG
CGGGCGCCGCACGCATGGAAAGCCGGCGCCCAGACGCTGGCGCTGCGCCACCGGCTCGAGGCCATGCCCAACGGCGGCGT
GGTGGCGATCAGCATCCCGCTCGCGCCATACCGCTGCCCGCCGGCGCCCTACGAGCGCGCCTGCCTGATCGCCCACTGGC
TGCAGCGCGCCCGGCCCGCGTCGCGCGTGCTGATCCTCGACGCCAACGACGACGTGACCTCCAAGGGCGCGCTGTTCAAG
CGCGTATGGGCGCAGCGCTACCCCGACCACATCGAATACCGGCCGCAATACAACGCCGTGGATATCGATGCGGCCGGCCG
CGTGCTCAAGTTCGATGTGCAGGACGACGTCGAAGCCGACGTCGTCAATCTGATCCCGCCGCAGCGTGCCGGGGCGATCG
CCGTTGCCGCCGGGCTGGCGACCGCCAACGGGCGTTGGTGCGAGGTCGATTTCCTGACCTTCGAATCGAAGGTGGCGCCG
GGCGTGCACGTGATCGGCGATGCCATCCAGACCGCGCCGCTGATGCCCAAGTCGGGCCACATGGCCAACCAGCATGGCAA
GGTGGCCGCCGCCGCGGTGGTGGCGCTGCTGGCCGGCCGCGCGCCCGATCCGTCGCCGCTGTATGCCAACACCTGCTACA
GCTTCACCGCGCCCGACGAGGCAATGCATGTCGCGACCGTCCACCGCTACGACACCGCAGAACGCACCATGGTGACCGTG
CCGGGCGCGGGCGGGCTGTCGGATGCGCCCTCGGTGGCGGAAGGCAACCTAGCGCAGGGCTGGAGCCGCGCGATCTGGTC
GGACATGCTGGGCTGA

Upstream 100 bases:

>100_bases
CGCGGCCGTCCACGGTGATGGGCCAGCTGATGCGCGGCTACGACGATGCGCAGATCGCCGCCATTGCCGGCTGGCTGTCG
CGCCAGCCAAAGGAGACGCC

Downstream 100 bases:

>100_bases
GCGGTAGCGGACAGGCCGTCCGGCAGCGGCATGAACAATGCGCAAGAATGGGCAAGCCGCCGTGCCGGCAGGCGCCTAAA
GTGCCACATGAGGCCGCTTG

Product: sulfide dehydrogenase flavocytochrome C oxidoreductase

Products: NA

Alternate protein names: FCSD; Flavocytochrome c flavoprotein subunit; FC [H]

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MSGSRFRKDRRATLRAIGATALAGPLAACASLPSIRNARVVVVGGGYGGATAAKYVRVFSGGRVDVTLVEPSAAFVSCPL
SNLVLSGDRDLASLTVPYDALVARHGVRWVRDRATAIDIGARQVRLAGGGTLDYDRLILSPGIDFVPGAIPGLADAATDA
RAPHAWKAGAQTLALRHRLEAMPNGGVVAISIPLAPYRCPPAPYERACLIAHWLQRARPASRVLILDANDDVTSKGALFK
RVWAQRYPDHIEYRPQYNAVDIDAAGRVLKFDVQDDVEADVVNLIPPQRAGAIAVAAGLATANGRWCEVDFLTFESKVAP
GVHVIGDAIQTAPLMPKSGHMANQHGKVAAAAVVALLAGRAPDPSPLYANTCYSFTAPDEAMHVATVHRYDTAERTMVTV
PGAGGLSDAPSVAEGNLAQGWSRAIWSDMLG

Sequences:

>Translated_431_residues
MSGSRFRKDRRATLRAIGATALAGPLAACASLPSIRNARVVVVGGGYGGATAAKYVRVFSGGRVDVTLVEPSAAFVSCPL
SNLVLSGDRDLASLTVPYDALVARHGVRWVRDRATAIDIGARQVRLAGGGTLDYDRLILSPGIDFVPGAIPGLADAATDA
RAPHAWKAGAQTLALRHRLEAMPNGGVVAISIPLAPYRCPPAPYERACLIAHWLQRARPASRVLILDANDDVTSKGALFK
RVWAQRYPDHIEYRPQYNAVDIDAAGRVLKFDVQDDVEADVVNLIPPQRAGAIAVAAGLATANGRWCEVDFLTFESKVAP
GVHVIGDAIQTAPLMPKSGHMANQHGKVAAAAVVALLAGRAPDPSPLYANTCYSFTAPDEAMHVATVHRYDTAERTMVTV
PGAGGLSDAPSVAEGNLAQGWSRAIWSDMLG
>Mature_430_residues
SGSRFRKDRRATLRAIGATALAGPLAACASLPSIRNARVVVVGGGYGGATAAKYVRVFSGGRVDVTLVEPSAAFVSCPLS
NLVLSGDRDLASLTVPYDALVARHGVRWVRDRATAIDIGARQVRLAGGGTLDYDRLILSPGIDFVPGAIPGLADAATDAR
APHAWKAGAQTLALRHRLEAMPNGGVVAISIPLAPYRCPPAPYERACLIAHWLQRARPASRVLILDANDDVTSKGALFKR
VWAQRYPDHIEYRPQYNAVDIDAAGRVLKFDVQDDVEADVVNLIPPQRAGAIAVAAGLATANGRWCEVDFLTFESKVAPG
VHVIGDAIQTAPLMPKSGHMANQHGKVAAAAVVALLAGRAPDPSPLYANTCYSFTAPDEAMHVATVHRYDTAERTMVTVP
GAGGLSDAPSVAEGNLAQGWSRAIWSDMLG

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016156
- InterPro:   IPR013027
- InterPro:   IPR015323
- InterPro:   IPR015904
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09242 FCSD-flav_bind; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 45440; Mature: 45309

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGSRFRKDRRATLRAIGATALAGPLAACASLPSIRNARVVVVGGGYGGATAAKYVRVFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCC
GGRVDVTLVEPSAAFVSCPLSNLVLSGDRDLASLTVPYDALVARHGVRWVRDRATAIDIG
CCEEEEEEECCCCCEEECCHHHEEEECCCCEEEEECCHHHHHHHHCHHHHHCCCEEEECC
ARQVRLAGGGTLDYDRLILSPGIDFVPGAIPGLADAATDARAPHAWKAGAQTLALRHRLE
CEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
AMPNGGVVAISIPLAPYRCPPAPYERACLIAHWLQRARPASRVLILDANDDVTSKGALFK
HCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH
RVWAQRYPDHIEYRPQYNAVDIDAAGRVLKFDVQDDVEADVVNLIPPQRAGAIAVAAGLA
HHHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCHHHCCCCCCCCEEEEEEEEE
TANGRWCEVDFLTFESKVAPGVHVIGDAIQTAPLMPKSGHMANQHGKVAAAAVVALLAGR
ECCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
APDPSPLYANTCYSFTAPDEAMHVATVHRYDTAERTMVTVPGAGGLSDAPSVAEGNLAQG
CCCCCCCEECCEEEECCCCHHEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
WSRAIWSDMLG
HHHHHHHHHCC
>Mature Secondary Structure 
SGSRFRKDRRATLRAIGATALAGPLAACASLPSIRNARVVVVGGGYGGATAAKYVRVFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCC
GGRVDVTLVEPSAAFVSCPLSNLVLSGDRDLASLTVPYDALVARHGVRWVRDRATAIDIG
CCEEEEEEECCCCCEEECCHHHEEEECCCCEEEEECCHHHHHHHHCHHHHHCCCEEEECC
ARQVRLAGGGTLDYDRLILSPGIDFVPGAIPGLADAATDARAPHAWKAGAQTLALRHRLE
CEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
AMPNGGVVAISIPLAPYRCPPAPYERACLIAHWLQRARPASRVLILDANDDVTSKGALFK
HCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH
RVWAQRYPDHIEYRPQYNAVDIDAAGRVLKFDVQDDVEADVVNLIPPQRAGAIAVAAGLA
HHHHHHCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCHHHCCCCCCCCEEEEEEEEE
TANGRWCEVDFLTFESKVAPGVHVIGDAIQTAPLMPKSGHMANQHGKVAAAAVVALLAGR
ECCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
APDPSPLYANTCYSFTAPDEAMHVATVHRYDTAERTMVTVPGAGGLSDAPSVAEGNLAQG
CCCCCCCEECCEEEECCCCHHEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
WSRAIWSDMLG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8390993; 1649169; 7939681 [H]