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The map label for this gene is 17547977

Identifier: 17547977

GI number: 17547977

Start: 3513578

End: 3514003

Strand: Reverse

Name: 17547977

Synonym: RSc3260

Alternate gene names: NA

Gene position: 3514003-3513578 (Counterclockwise)

Preceding gene: 17547978

Following gene: 17547976

Centisome position: 94.55

GC content: 70.66

Gene sequence:

>426_bases
ATGCCGGGATTCGGGCACAATATCGGCCTCACCGCCGCCCGCGCATCGATGCGGGCCGCCCCACCCACCGGAGACTACAT
GAAGTTCGCCGCATCGCTCGCCGCCGGCGCCGTGCTGGCCGGCTTGGCGCTGTCCGCTGCGCCTGCGCAGGCCGCCATCG
ACGCCGCCCGTGCCCAGGCCATCGCCAGCCAGAATGCCTGCCTCGGCTGCCACGCCGTCGATCGCAAGCTGGTCGGCCCG
TCCTACCAGGATGTCGCCGCCAAGTACAAGGGCGATGCCGGCGCCCAGGCCAAGCTCGTGCAGAAGGTGCGCCAGGGCGG
CCTGGGTGTCTGGGGGCAGATCCCGATGCCGGCCAACCCGAAGATCAGCGATGCTGACCTGAAGACCGTGATCGACTGGG
TGCTGGCAGGCGCCCCGGCCAAGTGA

Upstream 100 bases:

>100_bases
GCGCGGCTGGCGCTGGTCTGATCCGCCAGCCGGGGCATCCGGAACGCCCGCGCCGCGCCGGCTCCGGGCGTTGTGCCGCC
CACATGGCCGGCATCGGCCG

Downstream 100 bases:

>100_bases
AAGCGAGGATGCGCGCGATGCAAGACCACGCGACCGACCCCATCAACCCGACCCGCCGCGACGTGCTGCGCGCGGGCGCC
ATGATGGCGCTGCTGGTCTC

Product: cytochrome C transmembrane protein

Products: NA

Alternate protein names: Cytochrome c551; Cytochrome c8 [H]

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MPGFGHNIGLTAARASMRAAPPTGDYMKFAASLAAGAVLAGLALSAAPAQAAIDAARAQAIASQNACLGCHAVDRKLVGP
SYQDVAAKYKGDAGAQAKLVQKVRQGGLGVWGQIPMPANPKISDADLKTVIDWVLAGAPAK

Sequences:

>Translated_141_residues
MPGFGHNIGLTAARASMRAAPPTGDYMKFAASLAAGAVLAGLALSAAPAQAAIDAARAQAIASQNACLGCHAVDRKLVGP
SYQDVAAKYKGDAGAQAKLVQKVRQGGLGVWGQIPMPANPKISDADLKTVIDWVLAGAPAK
>Mature_140_residues
PGFGHNIGLTAARASMRAAPPTGDYMKFAASLAAGAVLAGLALSAAPAQAAIDAARAQAIASQNACLGCHAVDRKLVGPS
YQDVAAKYKGDAGAQAKLVQKVRQGGLGVWGQIPMPANPKISDADLKTVIDWVLAGAPAK

Specific function: Efficiently couple electron transfer between the cytochrome bc1 complex and the photosynthetic reaction center [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14190; Mature: 14059

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGFGHNIGLTAARASMRAAPPTGDYMKFAASLAAGAVLAGLALSAAPAQAAIDAARAQA
CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
IASQNACLGCHAVDRKLVGPSYQDVAAKYKGDAGAQAKLVQKVRQGGLGVWGQIPMPANP
HHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
KISDADLKTVIDWVLAGAPAK
CCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PGFGHNIGLTAARASMRAAPPTGDYMKFAASLAAGAVLAGLALSAAPAQAAIDAARAQA
CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
IASQNACLGCHAVDRKLVGPSYQDVAAKYKGDAGAQAKLVQKVRQGGLGVWGQIPMPANP
HHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
KISDADLKTVIDWVLAGAPAK
CCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8612646 [H]