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The map label for this gene is 17547937

Identifier: 17547937

GI number: 17547937

Start: 3478079

End: 3479560

Strand: Reverse

Name: 17547937

Synonym: RSc3218

Alternate gene names: NA

Gene position: 3479560-3478079 (Counterclockwise)

Preceding gene: 17547938

Following gene: 17547936

Centisome position: 93.63

GC content: 63.36

Gene sequence:

>1482_bases
ATGAAGGTCTTGATTACAACGTGGCCGCGCCGGCTGGGCGTGGCATTCGGTATTCTGGTTCTATCAACGGGCTTGATGCT
GGCGTGGATGGTGCATGCCGAGCAGACGAGCGCCCGCATTTACAGCGATGAGGAATTGATGAAGCGACTGGTGATCATGC
CGGCCCTGCTGGCCTTCGCGGTGTTCTTGCTGAGTACGGCGTTCATGCAACGCTCCGCGCTAGCGGCCACGCCCAAGGCG
GAAGCCGCGCCCGCGGCAGTGGAGCCGGCCAAGCCCTTCATGGCACAAGTGGTCGGCTTGGAATGGCTGAATCCGCTGCA
GCGGCGCGACTATCCGACCGAGTGGCAATTGCTGTGGACGCTGGGGCTGGTGAAGCCCAACAAGAATGACGATATGGTGC
GCACGGACCCCAAGAAATTCACCACCTTGCAGCCTATAGCCGGGATTGCGTTCGGCAATTGGGGGAAGGAATCATTCGAC
GGTTATTACGAGAAATACATCACCAAGCTGATGGTGCTGCTCCGTCAGCGTTACCTGATGAACCCGAGCTATTTCTATAC
GGTGGCCTCGAAGGACCGCAAGGATTGGCGGGAACTGGCGGGCGTCCATGTTGAGTTGGCCGTTCCTGCGAAACGGCTTG
ATCTGGTCGAGACGCAGACCTATCTGCAGAAAGAAATGGTCAGCTTCTTCGAGATCGGCAACCGCTCCGCCCCCGACCTG
TGGAGCCGCGACACGCCCCCCGATGTACGCATCACCCAGGGCGGCGCCAACGCCGGTTTCACCTCGCTCAACGCCGCACT
CGACTACCTGCAAGCCCACCCGCAGGAAAGCGTGTGGGTGATGAACTGGGACGCGCCCAGCTTCCCGCCCAACGATGAAC
AGCTCAACGAAAACCTCGCCGTGCTGTTCCTCGCCGGCCCGGACCTGAAGACCGAGCGCGACCCGCTGGCCTGGATCGGC
CGCGCCGCCACCGGCAACATCAACGGCCACGAACGCAAGGCCGGCACCACCCGCGTGATCCAGGCATGGAAGGCGACCAT
CGAGGCCGCCGCGAAGAACGCGGGCCACGGCATCGAGGACATTCACTACACCATCCATGACGCGGGCAAGGGTTCGGATG
CCGCATCGGAACGCCTTGCGGGCCTGAGCCGCACGCTCACCGAAACGATGCTGGAGTTCGACTACCAGAAGCAGACCTTC
AACACGGCGGGCCTGCTGGGCGACATGGGCGCGGGCTCGGCGCTGACCAACATGGCCTTGGCGATTGCCCGCGCCAACCA
CCTGGGCGGCAGCGTGCTGGTGGCCGGCACGACCGATCCCGAGCACCCCACCGCCGTGGTGGTGGCCCCGCCGTCCAAGC
TCACACCCATCGACCCGGACAAGGACTGGTTCCGCGCCCGTGGCGAGAACAACGCGTACTTGCCGTGGTGGGGCCATCGC
CATGGCGAAAGCTACGGCACCGTGCAGGGCTATTCCTGGTAA

Upstream 100 bases:

>100_bases
TTCTTCAGGAATGGGTCAAGAAGGCCGAGGAGGCCAAAATGCCGCCGGGCATCGTGGATGAGCGGGAGGGCAGCGTGCAC
TTGGTGGTGGGGGCGGTGGC

Downstream 100 bases:

>100_bases
TGGGCGCGATGCGCGGAATCATTCGAGTGGGCGACGCCACCAGCCACGGCGGCCGCGTGGAATCTGGCGCTCCGGCCAGT
ACCGTGATGGGCCGCGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Virulence Factor Pectin Lyase Fold

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MKVLITTWPRRLGVAFGILVLSTGLMLAWMVHAEQTSARIYSDEELMKRLVIMPALLAFAVFLLSTAFMQRSALAATPKA
EAAPAAVEPAKPFMAQVVGLEWLNPLQRRDYPTEWQLLWTLGLVKPNKNDDMVRTDPKKFTTLQPIAGIAFGNWGKESFD
GYYEKYITKLMVLLRQRYLMNPSYFYTVASKDRKDWRELAGVHVELAVPAKRLDLVETQTYLQKEMVSFFEIGNRSAPDL
WSRDTPPDVRITQGGANAGFTSLNAALDYLQAHPQESVWVMNWDAPSFPPNDEQLNENLAVLFLAGPDLKTERDPLAWIG
RAATGNINGHERKAGTTRVIQAWKATIEAAAKNAGHGIEDIHYTIHDAGKGSDAASERLAGLSRTLTETMLEFDYQKQTF
NTAGLLGDMGAGSALTNMALAIARANHLGGSVLVAGTTDPEHPTAVVVAPPSKLTPIDPDKDWFRARGENNAYLPWWGHR
HGESYGTVQGYSW

Sequences:

>Translated_493_residues
MKVLITTWPRRLGVAFGILVLSTGLMLAWMVHAEQTSARIYSDEELMKRLVIMPALLAFAVFLLSTAFMQRSALAATPKA
EAAPAAVEPAKPFMAQVVGLEWLNPLQRRDYPTEWQLLWTLGLVKPNKNDDMVRTDPKKFTTLQPIAGIAFGNWGKESFD
GYYEKYITKLMVLLRQRYLMNPSYFYTVASKDRKDWRELAGVHVELAVPAKRLDLVETQTYLQKEMVSFFEIGNRSAPDL
WSRDTPPDVRITQGGANAGFTSLNAALDYLQAHPQESVWVMNWDAPSFPPNDEQLNENLAVLFLAGPDLKTERDPLAWIG
RAATGNINGHERKAGTTRVIQAWKATIEAAAKNAGHGIEDIHYTIHDAGKGSDAASERLAGLSRTLTETMLEFDYQKQTF
NTAGLLGDMGAGSALTNMALAIARANHLGGSVLVAGTTDPEHPTAVVVAPPSKLTPIDPDKDWFRARGENNAYLPWWGHR
HGESYGTVQGYSW
>Mature_493_residues
MKVLITTWPRRLGVAFGILVLSTGLMLAWMVHAEQTSARIYSDEELMKRLVIMPALLAFAVFLLSTAFMQRSALAATPKA
EAAPAAVEPAKPFMAQVVGLEWLNPLQRRDYPTEWQLLWTLGLVKPNKNDDMVRTDPKKFTTLQPIAGIAFGNWGKESFD
GYYEKYITKLMVLLRQRYLMNPSYFYTVASKDRKDWRELAGVHVELAVPAKRLDLVETQTYLQKEMVSFFEIGNRSAPDL
WSRDTPPDVRITQGGANAGFTSLNAALDYLQAHPQESVWVMNWDAPSFPPNDEQLNENLAVLFLAGPDLKTERDPLAWIG
RAATGNINGHERKAGTTRVIQAWKATIEAAAKNAGHGIEDIHYTIHDAGKGSDAASERLAGLSRTLTETMLEFDYQKQTF
NTAGLLGDMGAGSALTNMALAIARANHLGGSVLVAGTTDPEHPTAVVVAPPSKLTPIDPDKDWFRARGENNAYLPWWGHR
HGESYGTVQGYSW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54686; Mature: 54686

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLITTWPRRLGVAFGILVLSTGLMLAWMVHAEQTSARIYSDEELMKRLVIMPALLAFA
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHH
VFLLSTAFMQRSALAATPKAEAAPAAVEPAKPFMAQVVGLEWLNPLQRRDYPTEWQLLWT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHCCCCCCEEEEEE
LGLVKPNKNDDMVRTDPKKFTTLQPIAGIAFGNWGKESFDGYYEKYITKLMVLLRQRYLM
EEECCCCCCCCCEECCCHHHCCCCCHHHCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NPSYFYTVASKDRKDWRELAGVHVELAVPAKRLDLVETQTYLQKEMVSFFEIGNRSAPDL
CCCEEEEECCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
WSRDTPPDVRITQGGANAGFTSLNAALDYLQAHPQESVWVMNWDAPSFPPNDEQLNENLA
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCEE
VLFLAGPDLKTERDPLAWIGRAATGNINGHERKAGTTRVIQAWKATIEAAAKNAGHGIED
EEEEECCCCCCCCCCHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
IHYTIHDAGKGSDAASERLAGLSRTLTETMLEFDYQKQTFNTAGLLGDMGAGSALTNMAL
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHH
AIARANHLGGSVLVAGTTDPEHPTAVVVAPPSKLTPIDPDKDWFRARGENNAYLPWWGHR
HHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
HGESYGTVQGYSW
CCCCCCCCCCCCC
>Mature Secondary Structure
MKVLITTWPRRLGVAFGILVLSTGLMLAWMVHAEQTSARIYSDEELMKRLVIMPALLAFA
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHH
VFLLSTAFMQRSALAATPKAEAAPAAVEPAKPFMAQVVGLEWLNPLQRRDYPTEWQLLWT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHCCCCCCEEEEEE
LGLVKPNKNDDMVRTDPKKFTTLQPIAGIAFGNWGKESFDGYYEKYITKLMVLLRQRYLM
EEECCCCCCCCCEECCCHHHCCCCCHHHCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC
NPSYFYTVASKDRKDWRELAGVHVELAVPAKRLDLVETQTYLQKEMVSFFEIGNRSAPDL
CCCEEEEECCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
WSRDTPPDVRITQGGANAGFTSLNAALDYLQAHPQESVWVMNWDAPSFPPNDEQLNENLA
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCEE
VLFLAGPDLKTERDPLAWIGRAATGNINGHERKAGTTRVIQAWKATIEAAAKNAGHGIED
EEEEECCCCCCCCCCHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
IHYTIHDAGKGSDAASERLAGLSRTLTETMLEFDYQKQTFNTAGLLGDMGAGSALTNMAL
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHH
AIARANHLGGSVLVAGTTDPEHPTAVVVAPPSKLTPIDPDKDWFRARGENNAYLPWWGHR
HHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
HGESYGTVQGYSW
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA