Click here to switch to the map view.

The map label for this gene is tnpR [H]

Identifier: 17547890

GI number: 17547890

Start: 3430395

End: 3431783

Strand: Direct

Name: tnpR [H]

Synonym: RSc3171

Alternate gene names: 17547890

Gene position: 3430395-3431783 (Clockwise)

Preceding gene: 17547889

Following gene: 17547891

Centisome position: 92.3

GC content: 66.38

Gene sequence:

>1389_bases
ATGACCGGCGCCGCACAGATCGCCTCCGCCAAGCCGCGCAAACGCTGCGCGGTGTACTGCCGCGTCTCCACCGACGAGCG
GCTGGACCAGGAATTCAACTCCATCGATGCGCAGAAGGAAGCGGGACACGCCTTCATCGCCAGCCAGCGCTCCGAAGGCT
GGATCTCGGTGGCCGACGACTATGACGATCCTGGCTTCTCCGGCGGCAACACCGACCGGCCCGGCCTGCGGCGCCTGTTG
GCGGACATCGAGCGCGGACGCATCGACATCGTCGTGGTCTACAAGATCGACCGCCTGACCCGCAGCCTGGCCGACTTCTC
CAAGATGGTCGAGGTGTTCGAGCGCCACGACGTGTCGTTCGTGTCGGTGACCCAGCAGTTCAACACCACGACGTCGATGG
GCCGGCTGATGCTCAACGTTCTGCTGTCCTTCGCCCAGTTCGAGCGCGAGGTCACGGGCGAGCGGATCCGCGACAAGATC
GCGGCGGCCAAGCGCAAGGGGCTGTGGATGGGCGGCGTGCCGCCTCTGGGCTACGACGTGCGTGATCGCCAACTGGTCGT
CAACGAAGTAGAGGCGACGGTGGTGCGGCGCATCTTCGAGGAGATGCTCACCATCGGGTCGCCCACGCAGATCGCTGCGC
GCCTGACCGCCGATGGCATCACGACCAAGGCGTGGACCACGCAGGACGGCCGCGCCCGCTACGGGGCCAGCATCGACAAG
AAGTACCTGTCCAAGCTGCTGCGCAACCGCATCTACCTGGGGGAGCTATCGCACAAGGGAAGCTGGTATCCCGGAACCTA
CGAGGCCATCATCGATGCCGAGTTGTGGCAGCGAGTCCATGCCGTACTGTCCACGGACAGTCACGCCCGGTCGACGGGGA
CCAAGGTGCTGTCACGCACCGACGCGCTGCTACGCGGGCTGCTGTACACGCCGTCCGGGGAGCGGATGTACCCGACCTAC
TCGCGCAAGAACGGCCGACAGTACCGCTACTACGTGTCGAAGTCGGAGAGCCGCTTCGGGGCGCCGGGCAAGCGCTACGA
GCGGCTGCCGGCGCCGGAGATCGAGGGGGCCGTGGTCGCGCAGATTCGCACCGTGCTGACCAGCCCGGAGGCGGTGGCTG
CGGTGGTTCAGCACATCCAGCACAACGGTGCCCAGGTCGATGAAGCATCAACGGTGATGGCGATGGGCCGGCTCGATGAC
GTGTGGGAGCGGCTCTTCCCCGCCGAGCGGCACCGCATCGCCAACCTGATGATCGAGCGCGTCGACCTCGTGAACGACGG
GGAGCGCCAGGGGATCAAAGTGAAATGGCGGGAGGTCGGGTGGGACGCGCTGATCGGGGAGTTCGTGTCCGGCAAGATCG
GGGCGGAGATGCTGGAGGTGGAGGCATGA

Upstream 100 bases:

>100_bases
AGGGCAAGCCCTTCAAGAGCCTGACGGCCCTGGCGCGGCACATTACCGGCACGCACTGGTCTGGCCCGCTGTTCTTTGGC
CTGACCAAGGGAGGCGCACG

Downstream 100 bases:

>100_bases
CCGGCGGCGCACTGGAGACTTTCGTGCCGGTGGCGTTCCGGCGCCGGGGCGCGCGGCGGGTCGTTGCTGATGACCGGGCG
ACCCACGACACGACCTTGCT

Product: site-specific integrase/resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MTGAAQIASAKPRKRCAVYCRVSTDERLDQEFNSIDAQKEAGHAFIASQRSEGWISVADDYDDPGFSGGNTDRPGLRRLL
ADIERGRIDIVVVYKIDRLTRSLADFSKMVEVFERHDVSFVSVTQQFNTTTSMGRLMLNVLLSFAQFEREVTGERIRDKI
AAAKRKGLWMGGVPPLGYDVRDRQLVVNEVEATVVRRIFEEMLTIGSPTQIAARLTADGITTKAWTTQDGRARYGASIDK
KYLSKLLRNRIYLGELSHKGSWYPGTYEAIIDAELWQRVHAVLSTDSHARSTGTKVLSRTDALLRGLLYTPSGERMYPTY
SRKNGRQYRYYVSKSESRFGAPGKRYERLPAPEIEGAVVAQIRTVLTSPEAVAAVVQHIQHNGAQVDEASTVMAMGRLDD
VWERLFPAERHRIANLMIERVDLVNDGERQGIKVKWREVGWDALIGEFVSGKIGAEMLEVEA

Sequences:

>Translated_462_residues
MTGAAQIASAKPRKRCAVYCRVSTDERLDQEFNSIDAQKEAGHAFIASQRSEGWISVADDYDDPGFSGGNTDRPGLRRLL
ADIERGRIDIVVVYKIDRLTRSLADFSKMVEVFERHDVSFVSVTQQFNTTTSMGRLMLNVLLSFAQFEREVTGERIRDKI
AAAKRKGLWMGGVPPLGYDVRDRQLVVNEVEATVVRRIFEEMLTIGSPTQIAARLTADGITTKAWTTQDGRARYGASIDK
KYLSKLLRNRIYLGELSHKGSWYPGTYEAIIDAELWQRVHAVLSTDSHARSTGTKVLSRTDALLRGLLYTPSGERMYPTY
SRKNGRQYRYYVSKSESRFGAPGKRYERLPAPEIEGAVVAQIRTVLTSPEAVAAVVQHIQHNGAQVDEASTVMAMGRLDD
VWERLFPAERHRIANLMIERVDLVNDGERQGIKVKWREVGWDALIGEFVSGKIGAEMLEVEA
>Mature_461_residues
TGAAQIASAKPRKRCAVYCRVSTDERLDQEFNSIDAQKEAGHAFIASQRSEGWISVADDYDDPGFSGGNTDRPGLRRLLA
DIERGRIDIVVVYKIDRLTRSLADFSKMVEVFERHDVSFVSVTQQFNTTTSMGRLMLNVLLSFAQFEREVTGERIRDKIA
AAKRKGLWMGGVPPLGYDVRDRQLVVNEVEATVVRRIFEEMLTIGSPTQIAARLTADGITTKAWTTQDGRARYGASIDKK
YLSKLLRNRIYLGELSHKGSWYPGTYEAIIDAELWQRVHAVLSTDSHARSTGTKVLSRTDALLRGLLYTPSGERMYPTYS
RKNGRQYRYYVSKSESRFGAPGKRYERLPAPEIEGAVVAQIRTVLTSPEAVAAVVQHIQHNGAQVDEASTVMAMGRLDDV
WERLFPAERHRIANLMIERVDLVNDGERQGIKVKWREVGWDALIGEFVSGKIGAEMLEVEA

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=159, Percent_Identity=32.7044025157233, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 51911; Mature: 51779

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAAQIASAKPRKRCAVYCRVSTDERLDQEFNSIDAQKEAGHAFIASQRSEGWISVADD
CCCCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHCCCEEEECCCCCCCEEECCC
YDDPGFSGGNTDRPGLRRLLADIERGRIDIVVVYKIDRLTRSLADFSKMVEVFERHDVSF
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCE
VSVTQQFNTTTSMGRLMLNVLLSFAQFEREVTGERIRDKIAAAKRKGLWMGGVPPLGYDV
EEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
RDRQLVVNEVEATVVRRIFEEMLTIGSPTQIAARLTADGITTKAWTTQDGRARYGASIDK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECEEECCCCCHHCCCCCCH
KYLSKLLRNRIYLGELSHKGSWYPGTYEAIIDAELWQRVHAVLSTDSHARSTGTKVLSRT
HHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DALLRGLLYTPSGERMYPTYSRKNGRQYRYYVSKSESRFGAPGKRYERLPAPEIEGAVVA
HHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCHHHH
QIRTVLTSPEAVAAVVQHIQHNGAQVDEASTVMAMGRLDDVWERLFPAERHRIANLMIER
HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
VDLVNDGERQGIKVKWREVGWDALIGEFVSGKIGAEMLEVEA
HHHCCCCCCCCCEEEHHHCCHHHHHHHHHCCHHCHHHHHCCC
>Mature Secondary Structure 
TGAAQIASAKPRKRCAVYCRVSTDERLDQEFNSIDAQKEAGHAFIASQRSEGWISVADD
CCCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHCCCEEEECCCCCCCEEECCC
YDDPGFSGGNTDRPGLRRLLADIERGRIDIVVVYKIDRLTRSLADFSKMVEVFERHDVSF
CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCE
VSVTQQFNTTTSMGRLMLNVLLSFAQFEREVTGERIRDKIAAAKRKGLWMGGVPPLGYDV
EEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCC
RDRQLVVNEVEATVVRRIFEEMLTIGSPTQIAARLTADGITTKAWTTQDGRARYGASIDK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECEEECCCCCHHCCCCCCH
KYLSKLLRNRIYLGELSHKGSWYPGTYEAIIDAELWQRVHAVLSTDSHARSTGTKVLSRT
HHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DALLRGLLYTPSGERMYPTYSRKNGRQYRYYVSKSESRFGAPGKRYERLPAPEIEGAVVA
HHHHHHHHCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCHHHH
QIRTVLTSPEAVAAVVQHIQHNGAQVDEASTVMAMGRLDDVWERLFPAERHRIANLMIER
HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
VDLVNDGERQGIKVKWREVGWDALIGEFVSGKIGAEMLEVEA
HHHCCCCCCCCCEEEHHHCCHHHHHHHHHCCHHCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2997130 [H]