Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 17547821

GI number: 17547821

Start: 3340544

End: 3341032

Strand: Reverse

Name: bkdR [H]

Synonym: RSc3102

Alternate gene names: 17547821

Gene position: 3341032-3340544 (Counterclockwise)

Preceding gene: 17547823

Following gene: 17547820

Centisome position: 89.9

GC content: 64.83

Gene sequence:

>489_bases
ATGAGCAAGGTGGAACTGGACAAGATCGACCGCAAGATTCTGGAGGTCCTCCAGAGCAATGGCCGTCTCACCAACCTGGA
GGTCGCCGAGCGGGTGAATCTGTCGCCCAGCCCCTGCCTGCGCCGCATCCGCCGCCTGGAGGAAAGCGGCGTGATCCGCC
AGTACGCTGCGCTGCTCGACCCGGGCAAGATCGGCCTGGGCCTGTCGGCCTACATCAACGTGCGGCTGGAGAAGCAGGGC
GGCGCACCCAAGGGCAAGGCGCCCTCCGACATTTTCCGCGCCGCCGTCGCCACCTGGCCCGAGGTCGTCACCTGCTACGC
CATGACCGGCGAGATGGACTACCTGCTCAAGGTGTTCGTCGAAGACATGGATCACTTCGCCCGCTTCATCCGCGACCAGC
TGCTGGCGCATCCGGCGGTGATCGACGTCAAGAGCAGTTTCGCGCTGGAGCGGATCAAGGATACGACCGCGTTGCCGGTC
GTGGTTTGA

Upstream 100 bases:

>100_bases
CAGTGTAGAAGTGTCCACGCACGCAAAAATTGCGAAGTTGTGCCCTCCTTGCTAAATTTGCGCAAGAAAATTGCCGAATG
TTTTGGTGCGGAGCAACAAA

Downstream 100 bases:

>100_bases
CGAGGCGCGCCGGGGCGGTAAGCGCCGCACGCCCTGGCTGAAGATGCCACTCCCGGAGGGCGGATGCGTTGCCCTGGCCT
TGGGGGGGCGGCTGCCGGCT

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGKIGLGLSAYINVRLEKQG
GAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPV
VV

Sequences:

>Translated_162_residues
MSKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGKIGLGLSAYINVRLEKQG
GAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPV
VV
>Mature_161_residues
SKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGKIGLGLSAYINVRLEKQGG
APKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPVV
V

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=155, Percent_Identity=41.9354838709677, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI1787116, Length=154, Percent_Identity=38.961038961039, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18065; Mature: 17934

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLD
CCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCC
PGKIGLGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFV
CCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPVVV
HHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLD
CCCHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCC
PGKIGLGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFV
CCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPVVV
HHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]