Click here to switch to the map view.

The map label for this gene is tISRso11b [H]

Identifier: 17547808

GI number: 17547808

Start: 3326442

End: 3327278

Strand: Reverse

Name: tISRso11b [H]

Synonym: RSc3089

Alternate gene names: 17547808

Gene position: 3327278-3326442 (Counterclockwise)

Preceding gene: 17547809

Following gene: 17547807

Centisome position: 89.53

GC content: 59.14

Gene sequence:

>837_bases
GTGAGTGCGCTGCGTGAGCGGCATTCATTGTCGAGCTTGCTCAAGGCCGCGAATCTCGCACGCAGCACGTACTACTACCA
GATGGCGACAGGCCAGGCAGAGGATCGTCACGGCGCGCTCAAGGAGCGCATTCAGCACATCTATGCCCAGCACAAGGGCC
GATATGGCTACCGCCGGATCACGGCGACGCTCCGTCGGGCAGGGACGTTGGTGAATCACAAGACCGTACAGCGATTGATG
TCGGCGCTACAGTTGAAGTCACTCGTGCGGCCGAAGAAATACCGCTCTTACCTCGGGCAAGTCGGGCGGGTTGCTCCCAA
TCTGCTACAGCGCGAGTTTGAGGCGAGCAAGCCGAACGAGAAGTGGGTAACGGACGTGACGGAGTTCAACGTCGGCGGCA
AAAAGCTGTACCTGTCGCCCGTCCTGGACCTATACAACGGAGAGATCGTCGCCTGGCAAACCAGTGAACGACCTGATTAC
ACGCTGATCCGGGAGATGCTCGACAAGGCGTTGCGCAAGCTGCGCCCGTGCGAGACGCCGATGCTGCATTCGGATCAAGG
CTGGCCGTATCAAATGGCAGCGTATCGTCGCAAACTGGCCGCGCGAGGCCTGCGCCAGAGCATGTCCCGCAAAGGCAACT
GCCTAGACAATGCGGCAATGGAAAGCTTCTTCGGCACACTCAAGTCAGAGTGCTTCCGGTTAGAGCGCTTCGCGGACATC
GACCAACTGCGACGCGCCATTGCCGAATACATCCGGTACTACAATCACGAGCGCATCAAGATCAAGCTAAAAGGGCTGAG
CCCTGTGCAATACAGGACCCAGCCCTTGGCCGCCTAA

Upstream 100 bases:

>100_bases
AAGAGAACGAGTGTTTGCGCGCGGAGGTGGCGTACCTAAAAAAGTTAGATGCCCTGCTGCGTGCCAAACAGCAGCAGGCA
CCAAAGAAAAAGCGCAAGTC

Downstream 100 bases:

>100_bases
ATTACCCGTCCAACTTTACGGGGTCAGTTCATCCGACGTCAATCGGAGCGGCCTTTTTTGCCTTAACTGAACGGCATTAC
GCCTTTCGGGCGCCTTTTTC

Product: isrso11-transposase orfb protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSALRERHSLSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGTLVNHKTVQRLM
SALQLKSLVRPKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDY
TLIREMLDKALRKLRPCETPMLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADI
DQLRRAIAEYIRYYNHERIKIKLKGLSPVQYRTQPLAA

Sequences:

>Translated_278_residues
MSALRERHSLSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGTLVNHKTVQRLM
SALQLKSLVRPKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDY
TLIREMLDKALRKLRPCETPMLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADI
DQLRRAIAEYIRYYNHERIKIKLKGLSPVQYRTQPLAA
>Mature_277_residues
SALRERHSLSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRITATLRRAGTLVNHKTVQRLMS
ALQLKSLVRPKKYRSYLGQVGRVAPNLLQREFEASKPNEKWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDYT
LIREMLDKALRKLRPCETPMLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADID
QLRRAIAEYIRYYNHERIKIKLKGLSPVQYRTQPLAA

Specific function: Involved in the transposition of the insertion sequence IS150 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=253, Percent_Identity=29.6442687747036, Blast_Score=109, Evalue=2e-24,
Organism=Escherichia coli, GI1789981, Length=274, Percent_Identity=55.4744525547445, Blast_Score=343, Evalue=6e-96,
Organism=Escherichia coli, GI1788405, Length=282, Percent_Identity=34.7517730496454, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787263, Length=282, Percent_Identity=34.7517730496454, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1786753, Length=282, Percent_Identity=34.7517730496454, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1786570, Length=282, Percent_Identity=34.7517730496454, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1786490, Length=282, Percent_Identity=34.7517730496454, Blast_Score=130, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32307; Mature: 32176

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALRERHSLSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRI
CCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
TATLRRAGTLVNHKTVQRLMSALQLKSLVRPKKYRSYLGQVGRVAPNLLQREFEASKPNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDYTLIREMLDKALRKLRPCETP
HHHHHHHHCCCCCCEEEHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
MLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
DQLRRAIAEYIRYYNHERIKIKLKGLSPVQYRTQPLAA
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCCCCCC
>Mature Secondary Structure 
SALRERHSLSSLLKAANLARSTYYYQMATGQAEDRHGALKERIQHIYAQHKGRYGYRRI
CHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
TATLRRAGTLVNHKTVQRLMSALQLKSLVRPKKYRSYLGQVGRVAPNLLQREFEASKPNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KWVTDVTEFNVGGKKLYLSPVLDLYNGEIVAWQTSERPDYTLIREMLDKALRKLRPCETP
HHHHHHHHCCCCCCEEEHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
MLHSDQGWPYQMAAYRRKLAARGLRQSMSRKGNCLDNAAMESFFGTLKSECFRLERFADI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
DQLRRAIAEYIRYYNHERIKIKLKGLSPVQYRTQPLAA
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2841644; 2541046; 8041620; 9278503 [H]