Click here to switch to the map view.

The map label for this gene is ccsA [H]

Identifier: 17547704

GI number: 17547704

Start: 3216919

End: 3218106

Strand: Reverse

Name: ccsA [H]

Synonym: RSc2985

Alternate gene names: 17547704

Gene position: 3218106-3216919 (Counterclockwise)

Preceding gene: 17547705

Following gene: 17547703

Centisome position: 86.59

GC content: 66.75

Gene sequence:

>1188_bases
ATGGAAGCGACCAACCTCCCCCAACCGTCCGCCCCGGCCGATCTGGGTGCACTGCAGCGGCCGTCCTACTTCCGTCGTCT
CGGCCCGTTCGACTGGCTGTTCGCCGCGCTGCTTGCCCTGGGCGCCGGCTATGCGTTCTCGCGCTATGGCGCCTATATGG
ACGGCTATGAGCGGGGCATCCTGGTGGCGGCGGTTCCGGCCTTCGCCTGGCTGGGCTGGACGTGGAAGCCGGTGCGGACG
CTGATGATCGGACTGGCCGTGCTGTCGCTGTTCGCCATCGCGCAGTACAGCGGTCCGAACGGGCCGGAGCTGGCCCGCGC
CGACCGCGTGTTCTTCCTCAAGTATTTCCTGGCCAGCCAGTCGGCCATCCTGTGGATGAGCGCGCTGATCTTCCTGTCGA
CGCTGTTCTTCTGGGCGGGGCTGGCGGCGCGCTGGCCCGCGGGCGGCGCGATCGGCAGCAAGCTGTGCTGGGCGGCCGTG
GTGCTGGGCCTGACCGGCATGCTGGTGCGCTGGTACGAGTCCTACCTGGTGGGGGCGGATATCGGCCACATTCCCATCTC
GAACCTGTACGAGGTGTTCATCCTCTTCACGCTGATCACCTCGCTGTTCTACCTGTATTACGAGCAGCGCTACCGGACGC
GCGCGCTGGGCCCGTTCGTGATGCTGGTGGTGTCGGCGGCGGTGGGCTTCCTGCTGTGGTACACGGTGTCGCGCGGCGCG
CAGGAGATCCAGCCGCTGGTGCCGGCGCTGCAGAGCTGGTGGATGAAGATCCACGTGCCGGCGAACTTCATCGGCTACGG
GACGTTCGCGCTGGCCGCCATGGTTGGGGCGGCCTATCTGCTCAAGGAGCACGGCGTGCTGGCCGACCGCCTGCCGTCGC
TGGAGGTGCTCGATGACGTCATGTACAAGGCCATCACCGTCGGCTTTGCCTTTTTCACCATCGCCACCATCCTCGGCGCG
CTGTGGGCGGCCGACGCCTGGGGCGGTTACTGGAGCTGGGATCCGAAAGAGACCTGGGCGCTGATCGTCTGGCTGAACTA
TGCGGCCTGGCTGCACATGCGGCTGATGAAGGGGCTGCGCGGCCGGATGGCGGCGTGGTGGGCACTGGTCGGCCTGCTGG
TGACGACTTTTGCCTTCCTGGGCGTGAACATGTTCCTGTCCGGCTTGCATAGCTACGGCGAACTCTGA

Upstream 100 bases:

>100_bases
GAGTTCGAGCGCCTCAAGCAGGATGTCCGCGCCGCAGCCGGCGCGCCCGGCGCCGCCACCGCAGCGGCCGCCGAACAACC
GCCAACGAAGTGAGCAGGTG

Downstream 100 bases:

>100_bases
GTCACAAAAAATCACCGGCGGACTGGAATAAAGGCACGCTCCGCGTGTTTACTGCTCTAGAGGGCGCGATCGGCGTGCCC
CTCCACACCAAGGAGAACAA

Product: transmembrane cytochrome C-type biogenesis transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MEATNLPQPSAPADLGALQRPSYFRRLGPFDWLFAALLALGAGYAFSRYGAYMDGYERGILVAAVPAFAWLGWTWKPVRT
LMIGLAVLSLFAIAQYSGPNGPELARADRVFFLKYFLASQSAILWMSALIFLSTLFFWAGLAARWPAGGAIGSKLCWAAV
VLGLTGMLVRWYESYLVGADIGHIPISNLYEVFILFTLITSLFYLYYEQRYRTRALGPFVMLVVSAAVGFLLWYTVSRGA
QEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVGAAYLLKEHGVLADRLPSLEVLDDVMYKAITVGFAFFTIATILGA
LWAADAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRMAAWWALVGLLVTTFAFLGVNMFLSGLHSYGEL

Sequences:

>Translated_395_residues
MEATNLPQPSAPADLGALQRPSYFRRLGPFDWLFAALLALGAGYAFSRYGAYMDGYERGILVAAVPAFAWLGWTWKPVRT
LMIGLAVLSLFAIAQYSGPNGPELARADRVFFLKYFLASQSAILWMSALIFLSTLFFWAGLAARWPAGGAIGSKLCWAAV
VLGLTGMLVRWYESYLVGADIGHIPISNLYEVFILFTLITSLFYLYYEQRYRTRALGPFVMLVVSAAVGFLLWYTVSRGA
QEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVGAAYLLKEHGVLADRLPSLEVLDDVMYKAITVGFAFFTIATILGA
LWAADAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRMAAWWALVGLLVTTFAFLGVNMFLSGLHSYGEL
>Mature_395_residues
MEATNLPQPSAPADLGALQRPSYFRRLGPFDWLFAALLALGAGYAFSRYGAYMDGYERGILVAAVPAFAWLGWTWKPVRT
LMIGLAVLSLFAIAQYSGPNGPELARADRVFFLKYFLASQSAILWMSALIFLSTLFFWAGLAARWPAGGAIGSKLCWAAV
VLGLTGMLVRWYESYLVGADIGHIPISNLYEVFILFTLITSLFYLYYEQRYRTRALGPFVMLVVSAAVGFLLWYTVSRGA
QEIQPLVPALQSWWMKIHVPANFIGYGTFALAAMVGAAYLLKEHGVLADRLPSLEVLDDVMYKAITVGFAFFTIATILGA
LWAADAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRMAAWWALVGLLVTTFAFLGVNMFLSGLHSYGEL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 43982; Mature: 43982

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA