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The map label for this gene is rpoE2 [C]

Identifier: 17547702

GI number: 17547702

Start: 3215812

End: 3216345

Strand: Reverse

Name: rpoE2 [C]

Synonym: RSc2983

Alternate gene names: 17547702

Gene position: 3216345-3215812 (Counterclockwise)

Preceding gene: 17547703

Following gene: 17547701

Centisome position: 86.54

GC content: 73.78

Gene sequence:

>534_bases
ATGTCCGACCTCGCTGGCCGCCTGATCGCGCTGACGCCGAGGCTGCGGCGTCACGCGCGCGGCCTGGTGGGTGACGCCGC
CCGCGCCGACGATCTCGTGCAGGACACGCTGGAACGCGCCTGGCGTTACCGCTGGCGCTTCCAGCTGCGCCCGAGGCTCG
GCGCCGCGGGCGAGGGCGACGGGCTGTTCGCGTGGCTGTTGACCATCATGCACCGCCTGCACCTGAATGCCGTGCGCCGG
CCGGACCGGCTGGAGCTGACCGATGCGCCGCCCGACATTCCCGTCAGCGACGACCCGGGCCTGCGCCGCGACCTGCTGCA
GGCGCTGGCATCGCTGCCCGACGATCAGCGCGCGGTGCTGCTGCTGGTCGGGCTGGAGCAACTGGCCTACCGAGAGGCCG
CCGACGTGCTGGGCGTGCCGCTGGGCACGGTGATGTCGCGGCTGTCGCGGGCGCGCGAACGCATGCGGGTGGCGCTCGAT
GGCGCGCCCGCCACATCGGGCGACAGCGGCACGACGCTGCACCGCGTGAAATGA

Upstream 100 bases:

>100_bases
TGGTCGAAGGACAAGATGCCCGGCGACCAGACCGGCGACGGGTTCATGAACGCCTGGCATATCGCCAAGCCGTAAGCGCC
GCGCCCCGATCGTCCGATCC

Downstream 100 bases:

>100_bases
GGCCGACCATGTCCGCCGCTTCCATCCACATCGAAGAACTCCACGCCTACGTCGACGGCCGCCTGCCCGCCACGCGCCGT
GCCGCGGTGGAGGCGTACCT

Product: RNA polymerase sigma-E factor (sigma-24) transcription regulator protein

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor RpoE; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Family Sigma Factor; RNA Polymerase Sigma Factor SigE; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor ECF Family Protein; ECF Sigma Factor; ECF Sigma Factor PrtI; ECF-Type Sigma Factor; Extracytoplasmic Sigma Factor EcfR; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-E Factor Protein; RNA Polymerase Sigma M Factor; FecI-Like Sigma-; RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; Sigma-70 Region 2 Domain-Containing Protein; RpoE6 RNA Polymerase Sigma Factor; ECF Family Sigma Factor H; DNA-Directed RNA Polymerase Sigma Subunit; Extracytoplasmic Sigma Factor Protein; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase ECF-Type Sigma Factor SigU; RNA Polymerase ECF Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit PrtI; ECF-Family Sigma Factor H; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSDLAGRLIALTPRLRRHARGLVGDAARADDLVQDTLERAWRYRWRFQLRPRLGAAGEGDGLFAWLLTIMHRLHLNAVRR
PDRLELTDAPPDIPVSDDPGLRRDLLQALASLPDDQRAVLLLVGLEQLAYREAADVLGVPLGTVMSRLSRARERMRVALD
GAPATSGDSGTTLHRVK

Sequences:

>Translated_177_residues
MSDLAGRLIALTPRLRRHARGLVGDAARADDLVQDTLERAWRYRWRFQLRPRLGAAGEGDGLFAWLLTIMHRLHLNAVRR
PDRLELTDAPPDIPVSDDPGLRRDLLQALASLPDDQRAVLLLVGLEQLAYREAADVLGVPLGTVMSRLSRARERMRVALD
GAPATSGDSGTTLHRVK
>Mature_176_residues
SDLAGRLIALTPRLRRHARGLVGDAARADDLVQDTLERAWRYRWRFQLRPRLGAAGEGDGLFAWLLTIMHRLHLNAVRRP
DRLELTDAPPDIPVSDDPGLRRDLLQALASLPDDQRAVLLLVGLEQLAYREAADVLGVPLGTVMSRLSRARERMRVALDG
APATSGDSGTTLHRVK

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19636; Mature: 19505

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLAGRLIALTPRLRRHARGLVGDAARADDLVQDTLERAWRYRWRFQLRPRLGAAGEGD
CCCHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
GLFAWLLTIMHRLHLNAVRRPDRLELTDAPPDIPVSDDPGLRRDLLQALASLPDDQRAVL
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
LLVGLEQLAYREAADVLGVPLGTVMSRLSRARERMRVALDGAPATSGDSGTTLHRVK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC
>Mature Secondary Structure 
SDLAGRLIALTPRLRRHARGLVGDAARADDLVQDTLERAWRYRWRFQLRPRLGAAGEGD
CCHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC
GLFAWLLTIMHRLHLNAVRRPDRLELTDAPPDIPVSDDPGLRRDLLQALASLPDDQRAVL
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
LLVGLEQLAYREAADVLGVPLGTVMSRLSRARERMRVALDGAPATSGDSGTTLHRVK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA