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The map label for this gene is ychE [H]

Identifier: 17547668

GI number: 17547668

Start: 3178059

End: 3178682

Strand: Reverse

Name: ychE [H]

Synonym: RSc2949

Alternate gene names: 17547668

Gene position: 3178682-3178059 (Counterclockwise)

Preceding gene: 17547669

Following gene: 17547667

Centisome position: 85.53

GC content: 63.62

Gene sequence:

>624_bases
ATGGATCTGACCAAGAGCTTCTTTTCGCTGCTGGCACTGATCAACCCGATCGGGGCGATCCCGTTCTTCATCAGTTTGAC
CGAGAGCCAGACGGATGAGGAAAAGCGGCGCACGATCAAGACCGCGTCGGTTTCGGTGGCGCTGGTGATCGGCATCAGCG
CGCTGCTGGGCGAGCAGATCATCGGTTTCTTCGGTTTTTCGGTCGGCTCGCTGCAGGTGGGCGGCGGGATCATCATGATC
ATGATCGCGCTGAACATGCTGAACGCGCAGACCAGCCGCACCAAGGCCACGCCGGAGGAAGAGGACGAGGCCGGCGTGCG
GGCCAGCATCGCGGTGGTGCCGCTGGCGATCCCCTTGCTGACGGGCCCGGGCTCGATCAGCACGGTGATCGTCTACGCGG
GCAAGACTCAGCACTGGTACGAGCTGCTCTTCCTGGCCGGCGTGGGCGTGCTGATCGCGCTGGTGGTGTGGATCGTGCTG
CGCGCAGCCGAGCCGATCGCCCGCGTGATCGGCCGCACCGGTATCAACGTCGGCACGCGCCTGATGGGGTTGATCCTCGC
GGCGCTGGCCGTGGAATTCATCGTCGACGGGCTGAAAACCCTGTTGCCTGTTCTCAAATCATGA

Upstream 100 bases:

>100_bases
CCGCGTGCCGCCGGCACGATCCCGTCGACCAAGGGCGCGCTCTGATTCCACGCATCGGCACGGCCGCGCCCGCCCGATAC
CTGACCGGCCACCCGATCCC

Downstream 100 bases:

>100_bases
CTACGATTGCAATTGTCGATTACGGCATGGGCAACCTGCGCTCGGTGGCGCAGGCCCTGAGTACCGTTGCCCCGGACGCC
GATGTGCGCATCAGTGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MDLTKSFFSLLALINPIGAIPFFISLTESQTDEEKRRTIKTASVSVALVIGISALLGEQIIGFFGFSVGSLQVGGGIIMI
MIALNMLNAQTSRTKATPEEEDEAGVRASIAVVPLAIPLLTGPGSISTVIVYAGKTQHWYELLFLAGVGVLIALVVWIVL
RAAEPIARVIGRTGINVGTRLMGLILAALAVEFIVDGLKTLLPVLKS

Sequences:

>Translated_207_residues
MDLTKSFFSLLALINPIGAIPFFISLTESQTDEEKRRTIKTASVSVALVIGISALLGEQIIGFFGFSVGSLQVGGGIIMI
MIALNMLNAQTSRTKATPEEEDEAGVRASIAVVPLAIPLLTGPGSISTVIVYAGKTQHWYELLFLAGVGVLIALVVWIVL
RAAEPIARVIGRTGINVGTRLMGLILAALAVEFIVDGLKTLLPVLKS
>Mature_207_residues
MDLTKSFFSLLALINPIGAIPFFISLTESQTDEEKRRTIKTASVSVALVIGISALLGEQIIGFFGFSVGSLQVGGGIIMI
MIALNMLNAQTSRTKATPEEEDEAGVRASIAVVPLAIPLLTGPGSISTVIVYAGKTQHWYELLFLAGVGVLIALVVWIVL
RAAEPIARVIGRTGINVGTRLMGLILAALAVEFIVDGLKTLLPVLKS

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=200, Percent_Identity=45.5, Blast_Score=168, Evalue=2e-43,
Organism=Escherichia coli, GI1787809, Length=196, Percent_Identity=31.6326530612245, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789842, Length=196, Percent_Identity=29.5918367346939, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 21871; Mature: 21871

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTKSFFSLLALINPIGAIPFFISLTESQTDEEKRRTIKTASVSVALVIGISALLGEQI
CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGFFGFSVGSLQVGGGIIMIMIALNMLNAQTSRTKATPEEEDEAGVRASIAVVPLAIPLL
HHHHCCCCCCEEECCHHHHHHHHHHHHHCHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHC
TGPGSISTVIVYAGKTQHWYELLFLAGVGVLIALVVWIVLRAAEPIARVIGRTGINVGTR
CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LMGLILAALAVEFIVDGLKTLLPVLKS
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLTKSFFSLLALINPIGAIPFFISLTESQTDEEKRRTIKTASVSVALVIGISALLGEQI
CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGFFGFSVGSLQVGGGIIMIMIALNMLNAQTSRTKATPEEEDEAGVRASIAVVPLAIPLL
HHHHCCCCCCEEECCHHHHHHHHHHHHHCHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHC
TGPGSISTVIVYAGKTQHWYELLFLAGVGVLIALVVWIVLRAAEPIARVIGRTGINVGTR
CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LMGLILAALAVEFIVDGLKTLLPVLKS
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2015910; 9097039; 9278503 [H]