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The map label for this gene is yccS [H]

Identifier: 17547608

GI number: 17547608

Start: 3115680

End: 3117902

Strand: Reverse

Name: yccS [H]

Synonym: RSc2889

Alternate gene names: 17547608

Gene position: 3117902-3115680 (Counterclockwise)

Preceding gene: 17547609

Following gene: 17547597

Centisome position: 83.9

GC content: 68.38

Gene sequence:

>2223_bases
ATGGACTACGTACACGATCCGCGCACCTTCCTCTACAGCCACTACGTTTCGCGCGGCATCCGGACCGCCACCGGCGTGAT
CGGCCTGACGCTGCTGGCCCTGCTGGCGATGGACCTGCAGGGCGCCATGGTGGTGTCGATCGGCGCGCTGTGCACCAGCC
AGATGGACCTGCCCAGCCCGCTGCGGCACAAGTTCAACGAACTGCTGGCGTGCGTGCTGCTGACCACGCTGGTGACCTTC
ATCGTGGCGGTGACGACGCCGTACGCGATCCTGCCGGCGGTGATCGTGGTGGTCAGCTTCCTGGCGGGGCTGATGGCGGT
GTACGGCAACAAGACGCTGTCGCTGCAGTTCGCGGCGCTGTTCGTGATGACGCTCACCTTCACCGAGGCGTTCGCCTTGC
GCGAGGCGCTGGAGCACACCGCCCAGTTTTTCCTCGGCGCGGCCGGCTACATGGCCTTTGCGATGGCGGTGGCGTGGGGC
CAGCGGCGCCGCATCAAGGAGCAGGTGCTGGCCGAATGCCTGTACGAACTGGCCATCTATGTCGAGCGCAAGGCCGGCTT
CTACGATACCGCGCTCGATTTCGATGCGCAGTTCGACGCGCTGGTGCGCCAGCAGATCTCGGTGGCCGACAAGCAGCAGC
TCGCGCGCGATTTCGTCTTCCGCGACAACCGCGATAACGGCGACACCGGCGACGGCCGCCTGGTGCAGATCCACATGCGC
ATGCTGGACCTGTACGAATACCTGCTGTCGACCAACACCGATTACCCGCTGCTGCGTCAGTGGCTGGCCGACGCCGAGAT
CATGCGGCTGCTGCGCGACAGTATCGAGCGGATGCGGCTGGACCTCGAAGCGCTGGCCTACGCCGTCGGCCGCGACCGGC
CGTCGCCCACGCCGATGCCGTACGACAAGGAGATGGCCGCCATCGATGCCGCGCTCGACGAGCTGCAGCACGGCCACCAC
GCGATTCCGCTGGAAGCCATCGCCGCGCTGGAGGAGTCGGTCGCGACCGTGCGCGGCGCGATCCGCCTGATGGCGCAGCT
GCACGCCGCCACCGCCACGCCGGTGGCGCTGTCCTCCGTTCTGCTGCGGCCGGACATGACGCCCTTCCTGACGCGGCAGC
AATATGAGCTGCGGCTGGTGCTGGACGCCTTCAACTGGCGCTCGCCGACCCTGCGCTTCGCCCTGCGCACGGCCATGGCG
GTGGCCGCCGGGCTGTGGATCGCCGACCACCTGCCGTACGCCTCGCACGGCTACTGGGTGTTGCTGACCATCGTGGTGAT
CCTCAAGCCGACCTTCAGCATGACGCGCCAGCGCAATGTCGACCGGGTGCTGGGCACGCTGATCGGCTGCGTGATCGCCG
CCGTGCTGCTGCGCTACGTGCATTCGACGTGGATTCTGCTGGGCGTGCTGTACCTGTCGACGGCCGCCAGCGCCGCTTTC
GTCACCGTGCGCTACCGCTACACGGCGGCGGCGGCGGCGGTGCAGGTGCTCATCCAGATCAACCTGTTGCTGCCGGGCAG
CAAGGGCGCCATCGGCGAACGGCTGGTCGACACGCTGCTCGGCGCGGCCATCGCCACCGCCTTCAGCTACGTGCTGCCGG
CCTGGGAATACCGCAACCTGCCCAAGCTGGTGGACGACGTGCTGCGCACCAACCGGCGCTTCATCGAGTCCGCGCGCGAT
CTGCTGCTCGGCTCGCCCAAGGACGACTTCGCCTACCGCGTGCAGCGCAAGCAGTTCATGGATGCGCTGACCGGGCTGAT
CGCCGCCTTCGCCCGCATGCTGAACGAGCCCAAGAGCCGGCACCGGGCGGTCGACAACCTGAACCGCTTCATCGTGCAGA
ACTACCTGGTCGCCGCGCATGTGGCGGCGGTGCGCATCCTGGTGCGCCAGCGCGGGCAGGAGCTCGACGCAGCCGATACG
CACGCCCTGATCGAACAGACCGTCGAGTCCGCGCTGGAGAGCTTGGCGCGCGCCAAGGAACGCTTCGACCAGGCCGTCCA
CGAAGGCGGCTGGGGCGTGCGCCCGCGTGACACGCAGGAGCTGGGCGCGGCCGAATTCGCCGACCAGTCGGCGCGCTCGC
GCATGATCGATGCCGCCACGCATCCCGATTCGCTGTCGGCCATGCACCTGCTGGAGCGTCGCCTGCAGGCGCTGCGTGCG
GATACCGCGAAGATCGCGCTGCGCTGCGGCGCGCTGGGGCGAGCGCTGCGTGTGGCGGATTGA

Upstream 100 bases:

>100_bases
GAGCCGTCGCCGCTGCGCTCGGCGTGGCTGGGCAAGCGCGCCGCGGCCCGTGGTGCCCGCCCGGCGAAGTCCAGGTCGGC
GGCCTGATCCACGCCGCCCG

Downstream 100 bases:

>100_bases
GCGTGGGTCAATCCGACGGTTTGGGCCGCTTGAGGTGCCGCCACGCTCTGAGCGCGAGCCACGTGGTGAGCGATGTGGCG
ATGAGGCCAAGCACCAGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 740

Protein sequence:

>740_residues
MDYVHDPRTFLYSHYVSRGIRTATGVIGLTLLALLAMDLQGAMVVSIGALCTSQMDLPSPLRHKFNELLACVLLTTLVTF
IVAVTTPYAILPAVIVVVSFLAGLMAVYGNKTLSLQFAALFVMTLTFTEAFALREALEHTAQFFLGAAGYMAFAMAVAWG
QRRRIKEQVLAECLYELAIYVERKAGFYDTALDFDAQFDALVRQQISVADKQQLARDFVFRDNRDNGDTGDGRLVQIHMR
MLDLYEYLLSTNTDYPLLRQWLADAEIMRLLRDSIERMRLDLEALAYAVGRDRPSPTPMPYDKEMAAIDAALDELQHGHH
AIPLEAIAALEESVATVRGAIRLMAQLHAATATPVALSSVLLRPDMTPFLTRQQYELRLVLDAFNWRSPTLRFALRTAMA
VAAGLWIADHLPYASHGYWVLLTIVVILKPTFSMTRQRNVDRVLGTLIGCVIAAVLLRYVHSTWILLGVLYLSTAASAAF
VTVRYRYTAAAAAVQVLIQINLLLPGSKGAIGERLVDTLLGAAIATAFSYVLPAWEYRNLPKLVDDVLRTNRRFIESARD
LLLGSPKDDFAYRVQRKQFMDALTGLIAAFARMLNEPKSRHRAVDNLNRFIVQNYLVAAHVAAVRILVRQRGQELDAADT
HALIEQTVESALESLARAKERFDQAVHEGGWGVRPRDTQELGAAEFADQSARSRMIDAATHPDSLSAMHLLERRLQALRA
DTAKIALRCGALGRALRVAD

Sequences:

>Translated_740_residues
MDYVHDPRTFLYSHYVSRGIRTATGVIGLTLLALLAMDLQGAMVVSIGALCTSQMDLPSPLRHKFNELLACVLLTTLVTF
IVAVTTPYAILPAVIVVVSFLAGLMAVYGNKTLSLQFAALFVMTLTFTEAFALREALEHTAQFFLGAAGYMAFAMAVAWG
QRRRIKEQVLAECLYELAIYVERKAGFYDTALDFDAQFDALVRQQISVADKQQLARDFVFRDNRDNGDTGDGRLVQIHMR
MLDLYEYLLSTNTDYPLLRQWLADAEIMRLLRDSIERMRLDLEALAYAVGRDRPSPTPMPYDKEMAAIDAALDELQHGHH
AIPLEAIAALEESVATVRGAIRLMAQLHAATATPVALSSVLLRPDMTPFLTRQQYELRLVLDAFNWRSPTLRFALRTAMA
VAAGLWIADHLPYASHGYWVLLTIVVILKPTFSMTRQRNVDRVLGTLIGCVIAAVLLRYVHSTWILLGVLYLSTAASAAF
VTVRYRYTAAAAAVQVLIQINLLLPGSKGAIGERLVDTLLGAAIATAFSYVLPAWEYRNLPKLVDDVLRTNRRFIESARD
LLLGSPKDDFAYRVQRKQFMDALTGLIAAFARMLNEPKSRHRAVDNLNRFIVQNYLVAAHVAAVRILVRQRGQELDAADT
HALIEQTVESALESLARAKERFDQAVHEGGWGVRPRDTQELGAAEFADQSARSRMIDAATHPDSLSAMHLLERRLQALRA
DTAKIALRCGALGRALRVAD
>Mature_740_residues
MDYVHDPRTFLYSHYVSRGIRTATGVIGLTLLALLAMDLQGAMVVSIGALCTSQMDLPSPLRHKFNELLACVLLTTLVTF
IVAVTTPYAILPAVIVVVSFLAGLMAVYGNKTLSLQFAALFVMTLTFTEAFALREALEHTAQFFLGAAGYMAFAMAVAWG
QRRRIKEQVLAECLYELAIYVERKAGFYDTALDFDAQFDALVRQQISVADKQQLARDFVFRDNRDNGDTGDGRLVQIHMR
MLDLYEYLLSTNTDYPLLRQWLADAEIMRLLRDSIERMRLDLEALAYAVGRDRPSPTPMPYDKEMAAIDAALDELQHGHH
AIPLEAIAALEESVATVRGAIRLMAQLHAATATPVALSSVLLRPDMTPFLTRQQYELRLVLDAFNWRSPTLRFALRTAMA
VAAGLWIADHLPYASHGYWVLLTIVVILKPTFSMTRQRNVDRVLGTLIGCVIAAVLLRYVHSTWILLGVLYLSTAASAAF
VTVRYRYTAAAAAVQVLIQINLLLPGSKGAIGERLVDTLLGAAIATAFSYVLPAWEYRNLPKLVDDVLRTNRRFIESARD
LLLGSPKDDFAYRVQRKQFMDALTGLIAAFARMLNEPKSRHRAVDNLNRFIVQNYLVAAHVAAVRILVRQRGQELDAADT
HALIEQTVESALESLARAKERFDQAVHEGGWGVRPRDTQELGAAEFADQSARSRMIDAATHPDSLSAMHLLERRLQALRA
DTAKIALRCGALGRALRVAD

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=626, Percent_Identity=22.3642172523962, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87082248, Length=669, Percent_Identity=22.4215246636771, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82288; Mature: 82288

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]