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The map label for this gene is yebA [H]

Identifier: 17547554

GI number: 17547554

Start: 3049863

End: 3050828

Strand: Reverse

Name: yebA [H]

Synonym: RSc2835

Alternate gene names: 17547554

Gene position: 3050828-3049863 (Counterclockwise)

Preceding gene: 17547556

Following gene: 17547553

Centisome position: 82.09

GC content: 69.05

Gene sequence:

>966_bases
ATGCAGATCATCCTGATTCACCCGCGCAAGGCCGGCGCGGTGCACCTGTCCCGCCGCCAGTTCGCGGTGGCCATGGGCGC
GGCGCTGCTGGCCGTGGCGGCGCTGTCGGGCGGGGCGACCTGGCTGGCGGTCAAGCGCGGCCTGGTGCCCGGCGCAACCG
CGGCCGCCAGCACCGAGGCCGACAAGCGCATTACCCGGGAAAACCTCAACCTGATGGCCGCGCGCATCGGCGAAATGCAG
GCGCAGATGGTGCGCCTCGATGCGTTGGGCGCCCGCGTTTCAGGGCTGGCCGGCGTGCCGCCGCGCGAGTTCGACTTCAA
GTCGATGCCGGGGCGCGGCGGACCGCAGGGAGCCGTCTCGCGCTCGCTGTCGATGCCGGAGATCCAATCCGAACTGGACC
GCCTGACCCGCTCGGCCGACCAGCGCAACGACTACCTGAGCGTGCTGGAGTCCACCCTGATGGACCGCCAGATCCACGCC
AAGATGATGCCGACGGTGCGGCCGGTTGCCACCGGCTACGATTCGTCGGGCTTTGGGGTGCGCATCGATCCGTTCACGGG
CCGGCGCACCCAGCATGACGGCGTCGACTTCGTCGGGCCGGTCGGCACACCGATCGTGGCCGCCGCCGGCGGGGTAGTGG
TGGCTAGCGAGTATCACCACGAGTACGGCAACATGATCGACATCGATCACGGCAATGGGCTGAAGACCCGGTATGCCCAT
GCCTCCAAGGTGTTCGTGAAGGTCGGCGACATCGTCAAGGCAGGGCAGCGGATCGCCCTGATCGGCCGCACCGGCCGCGC
GACCGGTCCGCATCTGCACTTCGAGGTGCACGTCAACGACGTGCCGCAGAATCCGGTCGCATTCCTGGAGAACGCCGGCC
AGCCAAAGATGGCGGTGGACAAGGATGCCGGCCCACAGATGGCCGCCGCCGATATCGGCAAGAGCCTGGCCGCCGCCGGC
CGTTGA

Upstream 100 bases:

>100_bases
CGTCTTGAGAGCGGGATGAACAAAGATGCGCATGCCGGCATTGTAGGGCGCTTCCTTGCGCTTTCGTGCCGTCAGGCGGC
TTTTTGTCCGGAAAAGAGCG

Downstream 100 bases:

>100_bases
CGGCCAGGGTTGCAGCCGGGCGGCCCGTCCCCAACTGCACCGGGATGTGGCCGCGCCGGAGTGCGGCGTTCCTGCCACAT
CCGGCCGGTCGGCCGCCATC

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MQIILIHPRKAGAVHLSRRQFAVAMGAALLAVAALSGGATWLAVKRGLVPGATAAASTEADKRITRENLNLMAARIGEMQ
AQMVRLDALGARVSGLAGVPPREFDFKSMPGRGGPQGAVSRSLSMPEIQSELDRLTRSADQRNDYLSVLESTLMDRQIHA
KMMPTVRPVATGYDSSGFGVRIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEYHHEYGNMIDIDHGNGLKTRYAH
ASKVFVKVGDIVKAGQRIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAVDKDAGPQMAAADIGKSLAAAG
R

Sequences:

>Translated_321_residues
MQIILIHPRKAGAVHLSRRQFAVAMGAALLAVAALSGGATWLAVKRGLVPGATAAASTEADKRITRENLNLMAARIGEMQ
AQMVRLDALGARVSGLAGVPPREFDFKSMPGRGGPQGAVSRSLSMPEIQSELDRLTRSADQRNDYLSVLESTLMDRQIHA
KMMPTVRPVATGYDSSGFGVRIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEYHHEYGNMIDIDHGNGLKTRYAH
ASKVFVKVGDIVKAGQRIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAVDKDAGPQMAAADIGKSLAAAG
R
>Mature_321_residues
MQIILIHPRKAGAVHLSRRQFAVAMGAALLAVAALSGGATWLAVKRGLVPGATAAASTEADKRITRENLNLMAARIGEMQ
AQMVRLDALGARVSGLAGVPPREFDFKSMPGRGGPQGAVSRSLSMPEIQSELDRLTRSADQRNDYLSVLESTLMDRQIHA
KMMPTVRPVATGYDSSGFGVRIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEYHHEYGNMIDIDHGNGLKTRYAH
ASKVFVKVGDIVKAGQRIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAVDKDAGPQMAAADIGKSLAAAG
R

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=204, Percent_Identity=36.2745098039216, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI87082174, Length=121, Percent_Identity=38.0165289256198, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789099, Length=112, Percent_Identity=36.6071428571429, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33989; Mature: 33989

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIILIHPRKAGAVHLSRRQFAVAMGAALLAVAALSGGATWLAVKRGLVPGATAAASTEA
CEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCHH
DKRITRENLNLMAARIGEMQAQMVRLDALGARVSGLAGVPPREFDFKSMPGRGGPQGAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
RSLSMPEIQSELDRLTRSADQRNDYLSVLESTLMDRQIHAKMMPTVRPVATGYDSSGFGV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCE
RIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEYHHEYGNMIDIDHGNGLKTRYAH
EECCCCCCCCCCCCCCEECCCCCCHHHHCCCEEEEHHHHHHCCCEEEEECCCCCCCHHHH
ASKVFVKVGDIVKAGQRIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAVD
HHEEEEEHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCEEEC
KDAGPQMAAADIGKSLAAAGR
CCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIILIHPRKAGAVHLSRRQFAVAMGAALLAVAALSGGATWLAVKRGLVPGATAAASTEA
CEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCHH
DKRITRENLNLMAARIGEMQAQMVRLDALGARVSGLAGVPPREFDFKSMPGRGGPQGAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
RSLSMPEIQSELDRLTRSADQRNDYLSVLESTLMDRQIHAKMMPTVRPVATGYDSSGFGV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCE
RIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEYHHEYGNMIDIDHGNGLKTRYAH
EECCCCCCCCCCCCCCEECCCCCCHHHHCCCEEEEHHHHHHCCCEEEEECCCCCCCHHHH
ASKVFVKVGDIVKAGQRIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAVD
HHEEEEEHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCEEEC
KDAGPQMAAADIGKSLAAAGR
CCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]