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The map label for this gene is cspA [H]

Identifier: 17547421

GI number: 17547421

Start: 2909040

End: 2909204

Strand: Reverse

Name: cspA [H]

Synonym: RSc2702

Alternate gene names: 17547421

Gene position: 2909204-2909040 (Counterclockwise)

Preceding gene: 17547424

Following gene: 17547420

Centisome position: 78.28

GC content: 55.15

Gene sequence:

>165_bases
TTGACGTGCAACGACTCCCCTGACACGGGTGGTAACGATCTGTTCGCTCATTTCTCCGAGATCCAGGGCAATGGGGTCAA
GTCACTTCAGGAAGGGCAGAAGGTTCATTATGTTGTGGGTGTGGGCCAGAACGGCCCGACTGCTACCAAGATTGAGCCGG
TCTGA

Upstream 100 bases:

>100_bases
GCTTCTCGCAGTCACTGCTTGACGCGAGCCGGAATGGCTCGGTACTGCGTGAGGCCATCGTGCGCTTGACCTCGGTCATC
GTAAGGATGCCGGCACGTCT

Downstream 100 bases:

>100_bases
TCAAGCTCACCTGCCAACAAGAAACCCCGCCACGCGGGGTTTTTTTGTCTGCCGCATATCGCGGTAGTCGCGCCAGACAT
GCCGCGTAGTCACTACAGAT

Product: cold shock-like transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 54; Mature: 53

Protein sequence:

>54_residues
MTCNDSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHYVVGVGQNGPTATKIEPV

Sequences:

>Translated_54_residues
MTCNDSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHYVVGVGQNGPTATKIEPV
>Mature_53_residues
TCNDSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHYVVGVGQNGPTATKIEPV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 5673; Mature: 5542

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCNDSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHYVVGVGQNGPTATKIEPV
CCCCCCCCCCCCCHHEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEECCC
>Mature Secondary Structure 
TCNDSPDTGGNDLFAHFSEIQGNGVKSLQEGQKVHYVVGVGQNGPTATKIEPV
CCCCCCCCCCCCHHEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]