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The map label for this gene is intZ [H]

Identifier: 17547341

GI number: 17547341

Start: 2824600

End: 2825802

Strand: Reverse

Name: intZ [H]

Synonym: RSc2622

Alternate gene names: 17547341

Gene position: 2825802-2824600 (Counterclockwise)

Preceding gene: 17547342

Following gene: 17547340

Centisome position: 76.04

GC content: 64.01

Gene sequence:

>1203_bases
ATGGCAAAGATCAAGCTCACCAAATCCGCAGTCGATGCGGCACAACCCCAAGCGCAGGCTGTCGAACTCAGGGATACCCT
GGTGCCCGGCTTCTTGTGCAAGGTTACCCCATCGGGCCGCAAGGTGTTCATGCTCCAGTACCGGACGAACGCCGGCGAGC
GCCGCAAGCCAGCCTTGGGTCAGTACGGGGAACTGACCGTCGAACAGGCCCGCTCGCTGGCTCAGGAATGGCTGGCCCAG
GTGCGCCGGGGCGGCGACCCAGCCGCAGACAAAGCGCAGGCGCGCAAAGCGCCCACGGTCAAGGAACTTTGCACGAAGTT
CATGGAGGACTACTCCAAGCTGCGCAACAAGCCCAGCACCCAGGAAGGCTATCAGAGCGTCATCGACCGCAACATCGTCC
CGATGATCGGGCGGATGAAGGTTCAGGACGTGAAGCGCCCGGACGTGGCCGGGATGATGAAGAAGATGACGCACAAGCCG
GCCGACGCGAACCGCACGTTCAGCGTCATGCGCCGCATGTTCAATCTGGCCGAGGTGTGGGGCTACCGGCCCGACGGCAC
CAATCCGTGCCGGCATGTCCCGATGTTCCCCAACGGCAAGGCCACCCACCTCATCAGCGACGAGGACATGGGCAAACTGT
TCCGCCATCTTGAGCATCTGGAGGCCGAGGGGATGGAAAGCTACGTCATCCCGCTGGCGATCCGGCTGCAATTCGAGTTC
GCCGGTCGTCGTGGTGAAATCGTCACGCTCCAATGGGATTGGGTGGACTTCGAGAACCGGCGCGTCGTCTGGCCCGACAG
CAAGACCGGCGGCATGTCCAAGCCCATGAGCGAAGAAGCCTATCGGCTGCTTTCGACAGCACCGCGCCGGGACGATTGCC
CGTATGTGCTGCCATCCCCGAACCGTCCCGGCCAGCACTTGACCACGGGCGAGTATTACAACGGCTGGAGCCGTGCGCTC
AAGGCAGCGGGCGCGGCGCATGTAGGTACGCACGGCATCCGCCACCGCTCTGCCACTGACATTGCCAACTCGGGCATCCC
GGTCAAGGTCGGCATGGCGCTGACCGCGCACAAGACCGTGGCGATGTTCATGCGCTACGTCCACACCGAGGATGACCCGG
TGCGCAAGGCGGCCGAACTGGTGGCGAACCGGCGCAAGACGATCACCGGCGCCAAGCGGCTCCCTGCGGAGGCAACTGCA
TGA

Upstream 100 bases:

>100_bases
CGAGTCCAACATATGCCGGTGCTTTACGAAACCTGACCCAACTTCCCTGCTGGTGGCCCCTATGAGGCTCTTGGGAATCG
GGTCTTTCCGAGGAGTCATC

Downstream 100 bases:

>100_bases
CCAGGCGCAAGGAATCCATCGCGTCACCCGCAGCGCCAAAGGCGCTGCTGGGCGATATTCGGGCACTGATCGAGGCGTCG
CGCCAGCGCGCCGCCTCGGC

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MAKIKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALGQYGELTVEQARSLAQEWLAQ
VRRGGDPAADKAQARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNIVPMIGRMKVQDVKRPDVAGMMKKMTHKP
ADANRTFSVMRRMFNLAEVWGYRPDGTNPCRHVPMFPNGKATHLISDEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEF
AGRRGEIVTLQWDWVDFENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRRDDCPYVLPSPNRPGQHLTTGEYYNGWSRAL
KAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRKTITGAKRLPAEATA

Sequences:

>Translated_400_residues
MAKIKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALGQYGELTVEQARSLAQEWLAQ
VRRGGDPAADKAQARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNIVPMIGRMKVQDVKRPDVAGMMKKMTHKP
ADANRTFSVMRRMFNLAEVWGYRPDGTNPCRHVPMFPNGKATHLISDEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEF
AGRRGEIVTLQWDWVDFENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRRDDCPYVLPSPNRPGQHLTTGEYYNGWSRAL
KAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRKTITGAKRLPAEATA
>Mature_399_residues
AKIKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALGQYGELTVEQARSLAQEWLAQV
RRGGDPAADKAQARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNIVPMIGRMKVQDVKRPDVAGMMKKMTHKPA
DANRTFSVMRRMFNLAEVWGYRPDGTNPCRHVPMFPNGKATHLISDEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEFA
GRRGEIVTLQWDWVDFENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRRDDCPYVLPSPNRPGQHLTTGEYYNGWSRALK
AAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRKTITGAKRLPAEATA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=362, Percent_Identity=26.2430939226519, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44856; Mature: 44725

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALG
CCEEEECHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCC
QYGELTVEQARSLAQEWLAQVRRGGDPAADKAQARKAPTVKELCTKFMEDYSKLRNKPST
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH
QEGYQSVIDRNIVPMIGRMKVQDVKRPDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVW
HHHHHHHHCCCCHHHHCCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GYRPDGTNPCRHVPMFPNGKATHLISDEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEF
CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEE
AGRRGEIVTLQWDWVDFENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRRDDCPYVLPSP
CCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCC
NRPGQHLTTGEYYNGWSRALKAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTV
CCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCHHCCCCHHHHHCCCCCEEECEEHHHHHHH
AMFMRYVHTEDDPVRKAAELVANRRKTITGAKRLPAEATA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
>Mature Secondary Structure 
AKIKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALG
CEEEECHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCC
QYGELTVEQARSLAQEWLAQVRRGGDPAADKAQARKAPTVKELCTKFMEDYSKLRNKPST
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH
QEGYQSVIDRNIVPMIGRMKVQDVKRPDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVW
HHHHHHHHCCCCHHHHCCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
GYRPDGTNPCRHVPMFPNGKATHLISDEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEF
CCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEE
AGRRGEIVTLQWDWVDFENRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRRDDCPYVLPSP
CCCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEECCCC
NRPGQHLTTGEYYNGWSRALKAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTV
CCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCHHCCCCHHHHHCCCCCEEECEEHHHHHHH
AMFMRYVHTEDDPVRKAAELVANRRKTITGAKRLPAEATA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]