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The map label for this gene is traF

Identifier: 17547321

GI number: 17547321

Start: 2806866

End: 2807465

Strand: Reverse

Name: traF

Synonym: RSc2602

Alternate gene names: NA

Gene position: 2807465-2806866 (Counterclockwise)

Preceding gene: 17547322

Following gene: 17547320

Centisome position: 75.54

GC content: 68.17

Gene sequence:

>600_bases
ATGACCGCCCCGACCACTACGGTAAACGCACCTGCCGTTGCGCCGCGTCTTCGCTCGCGCCTGCGCGCTTGCATCGTCGT
GGCGACACTGACCGCCATCGGCTTCGCTGCGCTGGCCTGGGCGGCTTTCGTGTCGCCGCTGCCGCGTCTGACCTACAACC
CGTCCGACAGCGTAGCGGTCGGCTGGTATCGCATCGACCCGTTCGACTCGCGCACCGCCTCGCTGCCACGTCCCTTGTCG
GTGGACAGCATCGTGCTGGTGCCGCTGCCGGCCACGGCTGCCACGCTGGCTGCGCAGCGTGGCTATCTGCCGACGCACAT
TCCGCTACTCAAACGTGTGGGTGCGGTGGCGCCGCAACACGTCTGCATCGTCGCCGGTCAGGTACGCATCGACGGCGTGC
CCTCGGCCGCCGTGCTGCCTGCTGATCGGCTGGGCCGGCCGCTGCCGTCCTTACAGCTTTGCCGCCGCCTTGAACCGGGC
GAACTGTACCTGTTGAGCGTGACCAATCCGGCATCGTTCGACAGCCGCTACTTCGGCCCGGTCAGCGCATCCGCCGTGAT
CGGCATTGCGCGCCCGATCTGGCTGGAGACACGCCCATGA

Upstream 100 bases:

>100_bases
CGTACTGGCGCACGCTGGGCAACCGTCTTGCGGCTCGCCTTGCGCTACCCGAATACACCGGCGAGCGGCACGCCGCCTGG
CTGGCCGGCAAGGTGCTGCC

Downstream 100 bases:

>100_bases
TGGCCGCCGACTCGCTGCACGTTGCAGTGCATCTCATCGTGCCATCGGGCGTGTCGATCCAGTGGCTTTCCGCATGTCGT
CGCGTGTGCAGTGCGAGCGC

Product: conjugal transfer TraF transmembrane protein

Products: NA

Alternate protein names: Conjugal Transfer Protein TraF; TraF Peptidase; Conjugal Transfer TRAF Transmembrane Protein; Type IV Secretory Pathway Protease TraF-Like Protein; Peptidase; Type IV Secretory Pathway Protease TraF; Conjugative Transfer Signal Peptidase TraF; Plasmid Transfer Protein TraF; Peptidase S; Raf Peptidase. Serine Peptidase. Merops Family; Conjugal Transfer Protein Traf; Conjugal Transfer TraF Transmembrane Protein; Plasmid Transfer Protein Traf; Traf Peptidase Serine Peptidase Merops Family; Transmembrane Anchor Conjugal Transfer Protein; RaF Peptidase. Serine Peptidase. MEROPS Family; TraF Peptidase Serine Peptidase MEROPS Family

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTAPTTTVNAPAVAPRLRSRLRACIVVATLTAIGFAALAWAAFVSPLPRLTYNPSDSVAVGWYRIDPFDSRTASLPRPLS
VDSIVLVPLPATAATLAAQRGYLPTHIPLLKRVGAVAPQHVCIVAGQVRIDGVPSAAVLPADRLGRPLPSLQLCRRLEPG
ELYLLSVTNPASFDSRYFGPVSASAVIGIARPIWLETRP

Sequences:

>Translated_199_residues
MTAPTTTVNAPAVAPRLRSRLRACIVVATLTAIGFAALAWAAFVSPLPRLTYNPSDSVAVGWYRIDPFDSRTASLPRPLS
VDSIVLVPLPATAATLAAQRGYLPTHIPLLKRVGAVAPQHVCIVAGQVRIDGVPSAAVLPADRLGRPLPSLQLCRRLEPG
ELYLLSVTNPASFDSRYFGPVSASAVIGIARPIWLETRP
>Mature_198_residues
TAPTTTVNAPAVAPRLRSRLRACIVVATLTAIGFAALAWAAFVSPLPRLTYNPSDSVAVGWYRIDPFDSRTASLPRPLSV
DSIVLVPLPATAATLAAQRGYLPTHIPLLKRVGAVAPQHVCIVAGQVRIDGVPSAAVLPADRLGRPLPSLQLCRRLEPGE
LYLLSVTNPASFDSRYFGPVSASAVIGIARPIWLETRP

Specific function: Unknown

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21147; Mature: 21016

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPTTTVNAPAVAPRLRSRLRACIVVATLTAIGFAALAWAAFVSPLPRLTYNPSDSVAV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEE
GWYRIDPFDSRTASLPRPLSVDSIVLVPLPATAATLAAQRGYLPTHIPLLKRVGAVAPQH
EEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCE
VCIVAGQVRIDGVPSAAVLPADRLGRPLPSLQLCRRLEPGELYLLSVTNPASFDSRYFGP
EEEEECEEEECCCCCCEECCHHHHCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
VSASAVIGIARPIWLETRP
CCHHHHEEECCEEEEECCC
>Mature Secondary Structure 
TAPTTTVNAPAVAPRLRSRLRACIVVATLTAIGFAALAWAAFVSPLPRLTYNPSDSVAV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEE
GWYRIDPFDSRTASLPRPLSVDSIVLVPLPATAATLAAQRGYLPTHIPLLKRVGAVAPQH
EEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCE
VCIVAGQVRIDGVPSAAVLPADRLGRPLPSLQLCRRLEPGELYLLSVTNPASFDSRYFGP
EEEEECEEEECCCCCCEECCHHHHCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC
VSASAVIGIARPIWLETRP
CCHHHHEEECCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA