Click here to switch to the map view.

The map label for this gene is trbB [H]

Identifier: 17547303

GI number: 17547303

Start: 2790492

End: 2791559

Strand: Reverse

Name: trbB [H]

Synonym: RSc2584

Alternate gene names: 17547303

Gene position: 2791559-2790492 (Counterclockwise)

Preceding gene: 17547304

Following gene: 17547302

Centisome position: 75.11

GC content: 69.48

Gene sequence:

>1068_bases
ATGAGCGCCGTTCCGCAAACCCCGCCCGAACGATCTTCCACCGCGGCTTCGCTGGATCGCCGCATCCAGATGCTGCGCAC
GGCTATGGGGCCGGTCATCGCCGCTGCGCTGGCCGACCCGGACGTGGTGGAAATCATGCTCAACCCCGACCGCACCCTAT
GGGTGGATCGGCTGTCCTCGGGCCGCACGCCGCTGGGCGTCGAACTGCCCGAGGCCGATGGCGAACGCATCATCCGCCTG
GTCGCCGCCCATGTCGGTGCGGAGGTGCATCGCGGCCAACCGCTCTTGACCGCCGAGCTGCCGGAAACCGGCGAACGCTT
CGAGGGCATCTTGCCGCCGGCTGCACCGGGGCCGGCCTTCGCGCTGCGCAAGCGCGCCGTGAGCATCATTGGCCTGGATC
GCTACGTCAGCGACGGCATCCTGACCACCGGGCAGGCGGACTTCCTGCGCCGCGCCGTGCGCGAGCGCCAGAACATCCTG
ATCGCCGGGGCAACGAGCAGCGGCAAGACCACGCTCGCCAATGCCTTGCTTGCGGAAATCGCCGCCACGGGCGACCGCGT
GCTGGTGCTCGAAGACACCATCGAGCTGCAATGCGCCGCCCGCGACCATGTGCCGCTGCGCACCCGCGCCGGCGTCGTGT
CCATGACCGAGTTGGTGCGCGCCACGATGCGTCTGCGCCCCGACCGCGTGATCGTCGGCGAGGTGCGCGGCGGCGAAGCC
CTGGACTTGGTGAAGGTGTGGGGCACTGGCCATCCCGGCGGCATCGCCACCATCCACGCCGGTTCCGCGCTGGGTGCGCT
GCTGCGCCTGGAACAGTTGATTCTTGAAGTGGCGGTGAATCCGCCGCGTGCGCTGATCGCCGAGGCGGTCAACGTCGTGA
TCCACATCGCCGGACGCGGCCGCAAGCGCCGCGTCGAAAGCATCGCCCGCGTCGTCGGCTTCGACGGTGTGGGCTACCGC
CTGGCGGACGCGCTGGAAACGCCGTTTCCCGAGCTGACGCCGGTTCCTCTTGCAGCCAATGCCGCTGCGCCTTCCCCGTC
CCTTGACCAACCTGGAGAACTGCCGTGA

Upstream 100 bases:

>100_bases
TGGTGCGTGACGTGGTGGAAGAACTGCACCCCCAGGATCACGAATTCGGGGCGCGAATGGATGACGCGGCAGCACTGGCC
GAAGCGCAGGAGCGTGCCTC

Downstream 100 bases:

>100_bases
CGCAGATGCACGTTCCTGCTTTCCGCTTTTCCGTAAATCCGATTCCCCGCGTATCCAGCCTCGCGTGGCTGCGCAGCCTG
GCCCGCCCGGCGGGGCAAGG

Product: conjugal transfer protein TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSAVPQTPPERSSTAASLDRRIQMLRTAMGPVIAAALADPDVVEIMLNPDRTLWVDRLSSGRTPLGVELPEADGERIIRL
VAAHVGAEVHRGQPLLTAELPETGERFEGILPPAAPGPAFALRKRAVSIIGLDRYVSDGILTTGQADFLRRAVRERQNIL
IAGATSSGKTTLANALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMTELVRATMRLRPDRVIVGEVRGGEA
LDLVKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAVNVVIHIAGRGRKRRVESIARVVGFDGVGYR
LADALETPFPELTPVPLAANAAAPSPSLDQPGELP

Sequences:

>Translated_355_residues
MSAVPQTPPERSSTAASLDRRIQMLRTAMGPVIAAALADPDVVEIMLNPDRTLWVDRLSSGRTPLGVELPEADGERIIRL
VAAHVGAEVHRGQPLLTAELPETGERFEGILPPAAPGPAFALRKRAVSIIGLDRYVSDGILTTGQADFLRRAVRERQNIL
IAGATSSGKTTLANALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMTELVRATMRLRPDRVIVGEVRGGEA
LDLVKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAVNVVIHIAGRGRKRRVESIARVVGFDGVGYR
LADALETPFPELTPVPLAANAAAPSPSLDQPGELP
>Mature_354_residues
SAVPQTPPERSSTAASLDRRIQMLRTAMGPVIAAALADPDVVEIMLNPDRTLWVDRLSSGRTPLGVELPEADGERIIRLV
AAHVGAEVHRGQPLLTAELPETGERFEGILPPAAPGPAFALRKRAVSIIGLDRYVSDGILTTGQADFLRRAVRERQNILI
AGATSSGKTTLANALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMTELVRATMRLRPDRVIVGEVRGGEAL
DLVKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAVNVVIHIAGRGRKRRVESIARVVGFDGVGYRL
ADALETPFPELTPVPLAANAAAPSPSLDQPGELP

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=150, Percent_Identity=28.6666666666667, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 37614; Mature: 37483

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVPQTPPERSSTAASLDRRIQMLRTAMGPVIAAALADPDVVEIMLNPDRTLWVDRLSS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHCC
GRTPLGVELPEADGERIIRLVAAHVGAEVHRGQPLLTAELPETGERFEGILPPAAPGPAF
CCCCCEEECCCCCHHHHHHHHHHHHCCHHHCCCCEEEECCCCCHHHHCCCCCCCCCCHHH
ALRKRAVSIIGLDRYVSDGILTTGQADFLRRAVRERQNILIAGATSSGKTTLANALLAEI
HHHHHHHHEEEHHHHHCCCCEECCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHH
AATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMTELVRATMRLRPDRVIVGEVRGGEA
HCCCCEEEEEECCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCE
LDLVKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAVNVVIHIAGRG
EEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCC
RKRRVESIARVVGFDGVGYRLADALETPFPELTPVPLAANAAAPSPSLDQPGELP
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAVPQTPPERSSTAASLDRRIQMLRTAMGPVIAAALADPDVVEIMLNPDRTLWVDRLSS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHCC
GRTPLGVELPEADGERIIRLVAAHVGAEVHRGQPLLTAELPETGERFEGILPPAAPGPAF
CCCCCEEECCCCCHHHHHHHHHHHHCCHHHCCCCEEEECCCCCHHHHCCCCCCCCCCHHH
ALRKRAVSIIGLDRYVSDGILTTGQADFLRRAVRERQNILIAGATSSGKTTLANALLAEI
HHHHHHHHEEEHHHHHCCCCEECCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHH
AATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMTELVRATMRLRPDRVIVGEVRGGEA
HCCCCEEEEEECCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCE
LDLVKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAVNVVIHIAGRG
EEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCC
RKRRVESIARVVGFDGVGYRLADALETPFPELTPVPLAANAAAPSPSLDQPGELP
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]