| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yfeH [C]
Identifier: 17547257
GI number: 17547257
Start: 2746191
End: 2747267
Strand: Direct
Name: yfeH [C]
Synonym: RSc2538
Alternate gene names: 17547257
Gene position: 2746191-2747267 (Clockwise)
Preceding gene: 17547255
Following gene: 17547260
Centisome position: 73.89
GC content: 66.95
Gene sequence:
>1077_bases ATGGCGTGCAATAGCGGCCATCCCTTGATCCGATCGGCGCCGTGGCGGCGCAAGCACATGAAGATCCCCTTCCTTTCCCG CATCGACGGCTTCATCCGCGCCATGCTGGTGATGGTCCTGCTGGCCCTGCTGTTCCCGTCGCTGGGCGCGAGCGCGGGGC CGCTGCACCTCGATATCGTCACCGTGCTGGGGGTGTCGCTGGTGTTCTTCCTGCACGGCGCGGCGCTGTCGCGCGAGAAG ATCGTCGAAGGCGCGCGCAACTGGCGCCTGCACCTGTTCGTGCAGAGCTGCACGTTCGTCCTGTTCCCGCTGATCGGCGC GGCGATCCTGGTCGCATGCAAGCCCTTCATCCCGGCCGAGCTGCTGCTGGGCGTGTTCTACCTGTGCGCGCTGCCGTCCA CGGTGTCGTCGTCGGTGGCGATGACCGCGATGGCCAAGGGAAACGTGCCGGCCGCCATCTTCAATGCCACCATCTCGGGC CTGATCGGCATGGTGGCCACGCCGCTGCTGATGAGCTTCGTGATCCAGGCCTCCGGCGCGGAGCTGCCGGTCGGCAAGGC ACTGCTGGGCGTGGCCGAGCAGTTGCTGCTGCCCTTCGTGCTGGGCCAGCTGCTGCGCCCGGCCATCGGCGGCTTCATCA CGCGGTATAAGGCGATCATCAACAAGGTCGATCGCGCGGTGATCCTGCTGATCGTCTTCAACTCGTTCGCCGATTCGACA CATGCGGGCGTGTGGTCGAAGTATCCGTGGGAGACCATCGTCGCCGTGGCGATCATGAGCGGCGCGCTGCTGTTCGTGGT GCTGGGCGCGACGACGTGGATCGCGCGGCGCTTCGGCTTCGGCCTGGCCGATGAGATCACCGCCGTGTTCTGCGGCTCGA AGAAGAGCCTGGCCAACGGCGTGCCGATGGCGAAGATCCTGTTTGCCGGCAACCCGGCGCTGGGCCTGATCGTGCTGCCG ATCATGATCTATCACCAGCTGCAACTGATCGTCTGCTCGACGCTGGCGCGCCGGTACGCGGATCGCATCGCGCACGCGGA AGACCGGGCCGCCGACCGCGCCGGCCAGCCCGCCTGA
Upstream 100 bases:
>100_bases CGCGTGCCACGGCAAGGAAGACGCGCAACTGGCGCAGCGTCACATTCATGTGAGTACCGTATGAATTGATTCGATCAATG CATTTGTATTCTAGGCGGGG
Downstream 100 bases:
>100_bases TCGGCCACACCACGATCTACGCCGGCGCGCTCAGGACAGCATCGCCGCCGGCCGTCACACGCCCGGATTGCGCGACAGCG GCGGGTTCTTGGCGAAGTAG
Product: lipoprotein transmembrane
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MACNSGHPLIRSAPWRRKHMKIPFLSRIDGFIRAMLVMVLLALLFPSLGASAGPLHLDIVTVLGVSLVFFLHGAALSREK IVEGARNWRLHLFVQSCTFVLFPLIGAAILVACKPFIPAELLLGVFYLCALPSTVSSSVAMTAMAKGNVPAAIFNATISG LIGMVATPLLMSFVIQASGAELPVGKALLGVAEQLLLPFVLGQLLRPAIGGFITRYKAIINKVDRAVILLIVFNSFADST HAGVWSKYPWETIVAVAIMSGALLFVVLGATTWIARRFGFGLADEITAVFCGSKKSLANGVPMAKILFAGNPALGLIVLP IMIYHQLQLIVCSTLARRYADRIAHAEDRAADRAGQPA
Sequences:
>Translated_358_residues MACNSGHPLIRSAPWRRKHMKIPFLSRIDGFIRAMLVMVLLALLFPSLGASAGPLHLDIVTVLGVSLVFFLHGAALSREK IVEGARNWRLHLFVQSCTFVLFPLIGAAILVACKPFIPAELLLGVFYLCALPSTVSSSVAMTAMAKGNVPAAIFNATISG LIGMVATPLLMSFVIQASGAELPVGKALLGVAEQLLLPFVLGQLLRPAIGGFITRYKAIINKVDRAVILLIVFNSFADST HAGVWSKYPWETIVAVAIMSGALLFVVLGATTWIARRFGFGLADEITAVFCGSKKSLANGVPMAKILFAGNPALGLIVLP IMIYHQLQLIVCSTLARRYADRIAHAEDRAADRAGQPA >Mature_357_residues ACNSGHPLIRSAPWRRKHMKIPFLSRIDGFIRAMLVMVLLALLFPSLGASAGPLHLDIVTVLGVSLVFFLHGAALSREKI VEGARNWRLHLFVQSCTFVLFPLIGAAILVACKPFIPAELLLGVFYLCALPSTVSSSVAMTAMAKGNVPAAIFNATISGL IGMVATPLLMSFVIQASGAELPVGKALLGVAEQLLLPFVLGQLLRPAIGGFITRYKAIINKVDRAVILLIVFNSFADSTH AGVWSKYPWETIVAVAIMSGALLFVVLGATTWIARRFGFGLADEITAVFCGSKKSLANGVPMAKILFAGNPALGLIVLPI MIYHQLQLIVCSTLARRYADRIAHAEDRAADRAGQPA
Specific function: Unknown
COG id: COG0385
COG function: function code R; Predicted Na+-dependent transporter
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfeH [H]
Homologues:
Organism=Homo sapiens, GI71725371, Length=316, Percent_Identity=31.6455696202532, Blast_Score=132, Evalue=5e-31, Organism=Escherichia coli, GI1788749, Length=334, Percent_Identity=44.9101796407186, Blast_Score=256, Evalue=1e-69, Organism=Saccharomyces cerevisiae, GI6323677, Length=394, Percent_Identity=21.0659898477157, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002657 - InterPro: IPR016833 [H]
Pfam domain/function: PF01758 SBF [H]
EC number: NA
Molecular weight: Translated: 38296; Mature: 38165
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACNSGHPLIRSAPWRRKHMKIPFLSRIDGFIRAMLVMVLLALLFPSLGASAGPLHLDIV CCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH TVLGVSLVFFLHGAALSREKIVEGARNWRLHLFVQSCTFVLFPLIGAAILVACKPFIPAE HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHH LLLGVFYLCALPSTVSSSVAMTAMAKGNVPAAIFNATISGLIGMVATPLLMSFVIQASGA HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ELPVGKALLGVAEQLLLPFVLGQLLRPAIGGFITRYKAIINKVDRAVILLIVFNSFADST CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HAGVWSKYPWETIVAVAIMSGALLFVVLGATTWIARRFGFGLADEITAVFCGSKKSLANG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCC VPMAKILFAGNPALGLIVLPIMIYHQLQLIVCSTLARRYADRIAHAEDRAADRAGQPA CCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ACNSGHPLIRSAPWRRKHMKIPFLSRIDGFIRAMLVMVLLALLFPSLGASAGPLHLDIV CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH TVLGVSLVFFLHGAALSREKIVEGARNWRLHLFVQSCTFVLFPLIGAAILVACKPFIPAE HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHH LLLGVFYLCALPSTVSSSVAMTAMAKGNVPAAIFNATISGLIGMVATPLLMSFVIQASGA HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ELPVGKALLGVAEQLLLPFVLGQLLRPAIGGFITRYKAIINKVDRAVILLIVFNSFADST CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC HAGVWSKYPWETIVAVAIMSGALLFVVLGATTWIARRFGFGLADEITAVFCGSKKSLANG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCC VPMAKILFAGNPALGLIVLPIMIYHQLQLIVCSTLARRYADRIAHAEDRAADRAGQPA CCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 1849605 [H]