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The map label for this gene is nocR [H]

Identifier: 17547216

GI number: 17547216

Start: 2703150

End: 2704115

Strand: Reverse

Name: nocR [H]

Synonym: RSc2497

Alternate gene names: 17547216

Gene position: 2704115-2703150 (Counterclockwise)

Preceding gene: 17547217

Following gene: 17547215

Centisome position: 72.76

GC content: 72.26

Gene sequence:

>966_bases
ATGCGCCTGCGCCAGATCGAAGTGTTCCGCGCCGTGATGCTGGTCGGCACCGTCAGCGAGGCGGCCCGCATGCTGGCCGT
GTCGCAGCCGGTGGTGACGCGCGTGCTGCAGCACACCGAGCTGCAGCTCGGCTTCCGCCTGTTCGACCGCACCAAGGGCC
GGCTGCAGCCGACCGCCGAGGCCTTCGAGCTGTTCACCGAGGTCGAGCGGCTGTACCAGGAGGTCGAGCGCGTGCGGCGC
GTCTCGGCCAACCTGCGCCACAAGGGCGCGGGGCGGCTGCGCGTGGCGGCCACGCCCAGCCTGGCGCCGAGCATCCTCGC
GCCGGCGGTGCGGCATTTCTCGCAGCGCCATCCCGATACCCAGGTGCGCGTGTTCACGCACCACACCGCCGAGATCGTGC
AGGGGCTGCTGTCGCAGGACATCGACGTCGGCTTCGCCTTCGCGCCGCCGGTGCATCCGGCCATTGGCACCACGCCGGTG
GCGCAGGGGCGCATCCTGCTGGCCGCGCCGCGCGCCTGGGTCGATGCGGGGGCCGATGGGCCGGCGCTGCATCGCATGGT
CGCCGAACGGCCCTTCATTGCGCTGGAAGACCAGATGTCGATCGGCTCGCTGGTCGGCCAGACGCTGGCGCGCAGCGGTC
TCGCGCCCCGGTCGACGCTGGAGGTGCAGACGTATTCGCTGGCTCGTTCGCTGGTGGAAGAGGCGCTGGGCGTGACGATG
CTGGATCAGTTCACGGCCGCCACTGGCAGCATGGACCGCATCGCCCTGTTTGCGCTGGAGCCCGCGCAGACCTTCGAGGT
CCGCGCCATGCGCGCTGAGCATCACGCGCCGTCGTCGCTGGCCGACAGCCTGGTGGCGTGCTTCGCGCAGGCCGCCCGCG
CGCTCTCCGACGCACTGCCCGAGCGGCTGGGGCCGGTGTCCTTCGTGCTGTCGCCCGACGGTGACGCCGGCGACGCGCCC
GGCTAA

Upstream 100 bases:

>100_bases
ACGGCGGCCACGCCGATGCCCGGCGCCCAGGCCTAGGCGAGGGCTTGCACCGGATGCCACAATCAACGTTTCCGGATGGT
TGACCGAGGACCGCGCCGCC

Downstream 100 bases:

>100_bases
CTTTTCGGCGGCATCCGCGTCTAACCGGCTTTCGTTGCCTTCCCAGGAGACCGACCCGATGCGCAGACTCCCGTGTGCCG
TGGTGCTCAGTGTGGCCGTG

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRLRQIEVFRAVMLVGTVSEAARMLAVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAEAFELFTEVERLYQEVERVRR
VSANLRHKGAGRLRVAATPSLAPSILAPAVRHFSQRHPDTQVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAIGTTPV
AQGRILLAAPRAWVDAGADGPALHRMVAERPFIALEDQMSIGSLVGQTLARSGLAPRSTLEVQTYSLARSLVEEALGVTM
LDQFTAATGSMDRIALFALEPAQTFEVRAMRAEHHAPSSLADSLVACFAQAARALSDALPERLGPVSFVLSPDGDAGDAP
G

Sequences:

>Translated_321_residues
MRLRQIEVFRAVMLVGTVSEAARMLAVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAEAFELFTEVERLYQEVERVRR
VSANLRHKGAGRLRVAATPSLAPSILAPAVRHFSQRHPDTQVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAIGTTPV
AQGRILLAAPRAWVDAGADGPALHRMVAERPFIALEDQMSIGSLVGQTLARSGLAPRSTLEVQTYSLARSLVEEALGVTM
LDQFTAATGSMDRIALFALEPAQTFEVRAMRAEHHAPSSLADSLVACFAQAARALSDALPERLGPVSFVLSPDGDAGDAP
G
>Mature_321_residues
MRLRQIEVFRAVMLVGTVSEAARMLAVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAEAFELFTEVERLYQEVERVRR
VSANLRHKGAGRLRVAATPSLAPSILAPAVRHFSQRHPDTQVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAIGTTPV
AQGRILLAAPRAWVDAGADGPALHRMVAERPFIALEDQMSIGSLVGQTLARSGLAPRSTLEVQTYSLARSLVEEALGVTM
LDQFTAATGSMDRIALFALEPAQTFEVRAMRAEHHAPSSLADSLVACFAQAARALSDALPERLGPVSFVLSPDGDAGDAP
G

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=289, Percent_Identity=26.643598615917, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI157672245, Length=242, Percent_Identity=26.8595041322314, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788481, Length=299, Percent_Identity=25.752508361204, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693105, Length=235, Percent_Identity=23.8297872340426, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=146, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082132, Length=283, Percent_Identity=23.6749116607774, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34714; Mature: 34714

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRQIEVFRAVMLVGTVSEAARMLAVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AFELFTEVERLYQEVERVRRVSANLRHKGAGRLRVAATPSLAPSILAPAVRHFSQRHPDT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
QVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAIGTTPVAQGRILLAAPRAWVDAGADG
EEEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCC
PALHRMVAERPFIALEDQMSIGSLVGQTLARSGLAPRSTLEVQTYSLARSLVEEALGVTM
HHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHH
LDQFTAATGSMDRIALFALEPAQTFEVRAMRAEHHAPSSLADSLVACFAQAARALSDALP
HHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ERLGPVSFVLSPDGDAGDAPG
HHCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MRLRQIEVFRAVMLVGTVSEAARMLAVSQPVVTRVLQHTELQLGFRLFDRTKGRLQPTAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AFELFTEVERLYQEVERVRRVSANLRHKGAGRLRVAATPSLAPSILAPAVRHFSQRHPDT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC
QVRVFTHHTAEIVQGLLSQDIDVGFAFAPPVHPAIGTTPVAQGRILLAAPRAWVDAGADG
EEEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCC
PALHRMVAERPFIALEDQMSIGSLVGQTLARSGLAPRSTLEVQTYSLARSLVEEALGVTM
HHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHH
LDQFTAATGSMDRIALFALEPAQTFEVRAMRAEHHAPSSLADSLVACFAQAARALSDALP
HHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ERLGPVSFVLSPDGDAGDAPG
HHCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]