| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is traC [H]
Identifier: 17547202
GI number: 17547202
Start: 2689399
End: 2691945
Strand: Reverse
Name: traC [H]
Synonym: RSc2483
Alternate gene names: 17547202
Gene position: 2691945-2689399 (Counterclockwise)
Preceding gene: 17547203
Following gene: 17547201
Centisome position: 72.43
GC content: 65.57
Gene sequence:
>2547_bases ATGAATGGCCCAATTCCGTTTGAACAGCAGTTCGCCGCCGCCCTGGTCGAACACGGCTTGCAGCCTGGCGAGATCGTGGC CGATGGCAAGCTGCACCGCTTCGACGGCCCCGACGAGAAGCGCGGCAAGGGCTCTGCCTGGTACGTGCTGCATGGCGACG GCTTGCCGGCCGGCAGCTTTGGCGACTGGCGCACCGGCTTGTCCGAAACGTGGTGCGCCAAGTCCGATCGCACCATGACC GACGCCGAGCGCCAGGCGCACCGCCAGCGTATCGAGCAGGCTAAGGCTGAAGCAGTTGCCGAGCGCGCCAAGCTGGCGGA GGAAGCCGCCGCAAAGTGCGCGGAGCTGTGGAGTATTGCCGCGAACGTTGACGGCGGACACGCCTACATCGAGCGCAAGG GCGTCAAGCCGGCCGGTGCGAAGCAGTTGCGCGATGCGCTGCTGATCCCGCTGCGGGATGCCGGCGGCGAACTGCGCAGC CTGCAGTTCATCCAGCCGGACGGCTCTAAGCGCTTCAAGACGGGCGGCACGGTGGCGGGTTGCTACTGCGCCCTGGGCGG CAAGCCCGGCCCGGATGCTCCGCTGCTGATCTGCGAGGGCTGGGCCACGGCGTGCAGCCTGCATCAGGCGACCGGCTACC CGGTGGCTGCCGCGATGAACGCCGGCAACCTGCTGGCGGTGGCGCAGGCCCTGCGGGCCAAGCTGCCCGACGCGTCGATG ATCGTCTGCGCCGACGACGACATTGAGACGGCGGGCAATCCGGGGTTGACCAAGGCGCGGGAAGCAGCCCAGGCCATCGG CGCACTGCTGGCGGTACCGGATTTCGGGCCGGAGCGCCCGGACGGCGCCACCGACTTCAATGACCTGGCCGTGGCGTGCG GTCACGGTGCTGTCCTGGATTGCATTGAGGCCGTTCGGAGCGGAAAAGCCGCCGACGATGGGGCAGACGAAATCACGGTG GCAGAAACCGACGAGCAGGCCGTCGAGCGTCTGGCTTCCCTGAGCCCGATGCAATACGACCGTGTGCGCAAGGCCGAGGC CAAACGCATGGGCGTGCAGTTCGGCACGCTTGACCGGATGGTGAAGGACGCACGCGGCGAGGCAGCGAGCGAGGAGGCGG CTCCGTTCGAGGATGTGGAGCCGTGGCCCGAGCCGGTGGACGGCGCGGAGCTGCTGAGCGAGATCGCCCGCTCTATCCGG CGCTTCATCATCTGCGACCCGGAGACCATCGCAGCGACGGCGCTATGGTGCGTCGCATCTTGGCTGGCGGATTCCGTCAA CGTCTGCCCGATCTTGCTCATCAACGCTCCCGAAAAGGCCTGCGGTAAGACGCAACTGCTGACGGTGACCGGAAAGCTAG TGCCACGGCCAGCTCAGGCGGCGGGCATTTCGCCATCGGTGCTGTTCCGCATGATCGAGAAGTACAAGCCAACGCTGCTG GTGGACGAGATTGAAACAGTGCTGACCAAGGAGGCGGAAGACCTGCGCGGGCTGATGAACGCCGGCCACACCCGCGATTC CGCGTTCGTCTGGCGCAGTGTCGCCGTGGGTGATGACTTCGAGCCCAAGCGGTTCAGTGTGTTCGGGTTCAAGGCCGTGG CCGGCATCAACGCCGACAAGTTGGCCGAGACGATCACCAGCCGCGCTGTGGTGGCGCAGATGCGTCGCAAGATGCCGCAC GAGACGGCGGAGCGCCTGCGACACGCCGAGCCCGATCTGTTCGACACGCTGTGCGCGAAGCTGGCGCGCTGGGCCGACGA CAACGGCGACGCGATCCGCGTTGCCCGTCCGAACCTGCCTGATGCGCTGGGGGATCGGGATCAGGACAACTGGGAGCCGC TGCTCGCCGTAGCCGATCTGGCGGGCGGTACATGGCCGGACTACGCACGCGGCGCGGCGCTCAAGCTGTGCAATCGAGGC GGCGAGGCTGCGCAGAGTACCGGGGCTGAGCTGCTGGCAGACATTCAGGCCGTGTTCGACCGAAAGGGGATGCAGCGCAT CTCCATGGCCGATCTGCTGGCCGCGCTCTGCGAGGACGACGAAGCGCCCTGGAAGACGTGGAATCGTGGCAAGGAGATGA CGACCCGCCAGTTGGGCAAGAAGCTGGGCGAGTACGGCATCAAGAGCAAGGTCGTGCGGATCGGGTATGACGCACCGAAA GGCTTCGACGTTGACCAGTTCAGCGATGCCTTCGCTCGGTATTTGTCTTCGCCGGATACCCCCCTCCCGCCGGTCACTCG GTCACAACCCAATGTTCATGCGGGTTTCGACGTGACCGAGCGAAAAACCGTTCAGTCACGTGACCGAAATCCGGTCACAT CCACGGAGAGCGCGAGCTCAATTCGCGCTCACGCCGCCGAGACGGTCGAGCATGGTAAGGCCGCGGGCTCCTGTGACCGA AATTCGGTCACACCAGATTTTTCGGTCACCAACAAATCCTTGCTGGATAAGGCTTGTGACCGTGTGACCGATGTGACCGA AGAAAACGGGGATAGCGAAGAGAAAGAAATCCCCGCGACCGACGACGAGGCGGAGGCCGACCTATGA
Upstream 100 bases:
>100_bases CCATGAGTTTGAATCCAAACCGACTGCACGGGCAGCCGGGCGGGGGCGCTCGCGCCCGCGAACCTAGCGCGGCCCGTGTT TTCTCGAGGGGGCTGACCGC
Downstream 100 bases:
>100_bases GCGTTGCATCACTTTTGAGCAAGGCGCAGGCGATGGGTGTCCGGCTGATTCTGAACGGTAACGGGGTGAAGCTGCGCGGA CCCGCCGAGTCGATTGCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: Replication primase [H]
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MNGPIPFEQQFAAALVEHGLQPGEIVADGKLHRFDGPDEKRGKGSAWYVLHGDGLPAGSFGDWRTGLSETWCAKSDRTMT DAERQAHRQRIEQAKAEAVAERAKLAEEAAAKCAELWSIAANVDGGHAYIERKGVKPAGAKQLRDALLIPLRDAGGELRS LQFIQPDGSKRFKTGGTVAGCYCALGGKPGPDAPLLICEGWATACSLHQATGYPVAAAMNAGNLLAVAQALRAKLPDASM IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLDCIEAVRSGKAADDGADEITV AETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRMVKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIR RFIICDPETIAATALWCVASWLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL VDEIETVLTKEAEDLRGLMNAGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADKLAETITSRAVVAQMRRKMPH ETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLPDALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRG GEAAQSTGAELLADIQAVFDRKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYGIKSKVVRIGYDAPK GFDVDQFSDAFARYLSSPDTPLPPVTRSQPNVHAGFDVTERKTVQSRDRNPVTSTESASSIRAHAAETVEHGKAAGSCDR NSVTPDFSVTNKSLLDKACDRVTDVTEENGDSEEKEIPATDDEAEADL
Sequences:
>Translated_848_residues MNGPIPFEQQFAAALVEHGLQPGEIVADGKLHRFDGPDEKRGKGSAWYVLHGDGLPAGSFGDWRTGLSETWCAKSDRTMT DAERQAHRQRIEQAKAEAVAERAKLAEEAAAKCAELWSIAANVDGGHAYIERKGVKPAGAKQLRDALLIPLRDAGGELRS LQFIQPDGSKRFKTGGTVAGCYCALGGKPGPDAPLLICEGWATACSLHQATGYPVAAAMNAGNLLAVAQALRAKLPDASM IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLDCIEAVRSGKAADDGADEITV AETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRMVKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIR RFIICDPETIAATALWCVASWLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL VDEIETVLTKEAEDLRGLMNAGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADKLAETITSRAVVAQMRRKMPH ETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLPDALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRG GEAAQSTGAELLADIQAVFDRKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYGIKSKVVRIGYDAPK GFDVDQFSDAFARYLSSPDTPLPPVTRSQPNVHAGFDVTERKTVQSRDRNPVTSTESASSIRAHAAETVEHGKAAGSCDR NSVTPDFSVTNKSLLDKACDRVTDVTEENGDSEEKEIPATDDEAEADL >Mature_848_residues MNGPIPFEQQFAAALVEHGLQPGEIVADGKLHRFDGPDEKRGKGSAWYVLHGDGLPAGSFGDWRTGLSETWCAKSDRTMT DAERQAHRQRIEQAKAEAVAERAKLAEEAAAKCAELWSIAANVDGGHAYIERKGVKPAGAKQLRDALLIPLRDAGGELRS LQFIQPDGSKRFKTGGTVAGCYCALGGKPGPDAPLLICEGWATACSLHQATGYPVAAAMNAGNLLAVAQALRAKLPDASM IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLDCIEAVRSGKAADDGADEITV AETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRMVKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIR RFIICDPETIAATALWCVASWLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL VDEIETVLTKEAEDLRGLMNAGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADKLAETITSRAVVAQMRRKMPH ETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLPDALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRG GEAAQSTGAELLADIQAVFDRKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYGIKSKVVRIGYDAPK GFDVDQFSDAFARYLSSPDTPLPPVTRSQPNVHAGFDVTERKTVQSRDRNPVTSTESASSIRAHAAETVEHGKAAGSCDR NSVTPDFSVTNKSLLDKACDRVTDVTEENGDSEEKEIPATDDEAEADL
Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013610 - InterPro: IPR006171 [H]
Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 91145; Mature: 91145
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGPIPFEQQFAAALVEHGLQPGEIVADGKLHRFDGPDEKRGKGSAWYVLHGDGLPAGSF CCCCCCHHHHHHHHHHHCCCCCCCEEECCEEECCCCCCCCCCCCCEEEEEECCCCCCCCC GDWRTGLSETWCAKSDRTMTDAERQAHRQRIEQAKAEAVAERAKLAEEAAAKCAELWSIA CCHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANVDGGHAYIERKGVKPAGAKQLRDALLIPLRDAGGELRSLQFIQPDGSKRFKTGGTVAG HCCCCCHHEEEECCCCCCCHHHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEE CYCALGGKPGPDAPLLICEGWATACSLHQATGYPVAAAMNAGNLLAVAQALRAKLPDASM HEEECCCCCCCCCCEEEECCHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCE IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLD EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHH CIEAVRSGKAADDGADEITVAETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRM HHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH VKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIRRFIICDPETIAATALWCVAS HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHH WLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL HHHCCCCCCEEEEEECCHHHCCCEEEEEEECCCCCCCHHHCCCCHHHHHHHHHHCCCCEE VDEIETVLTKEAEDLRGLMNAGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADK HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCCEEEEECHHHHHCCCHHH LAETITSRAVVAQMRRKMPHETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLP HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC DALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRGGEAAQSTGAELLADIQAVFD HHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH RKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYGIKSKVVRIGYDAPK HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCHHCEEEEECCCCC GFDVDQFSDAFARYLSSPDTPLPPVTRSQPNVHAGFDVTERKTVQSRDRNPVTSTESASS CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHH IRAHAAETVEHGKAAGSCDRNSVTPDFSVTNKSLLDKACDRVTDVTEENGDSEEKEIPAT HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DDEAEADL CCCCCCCC >Mature Secondary Structure MNGPIPFEQQFAAALVEHGLQPGEIVADGKLHRFDGPDEKRGKGSAWYVLHGDGLPAGSF CCCCCCHHHHHHHHHHHCCCCCCCEEECCEEECCCCCCCCCCCCCEEEEEECCCCCCCCC GDWRTGLSETWCAKSDRTMTDAERQAHRQRIEQAKAEAVAERAKLAEEAAAKCAELWSIA CCHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANVDGGHAYIERKGVKPAGAKQLRDALLIPLRDAGGELRSLQFIQPDGSKRFKTGGTVAG HCCCCCHHEEEECCCCCCCHHHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEE CYCALGGKPGPDAPLLICEGWATACSLHQATGYPVAAAMNAGNLLAVAQALRAKLPDASM HEEECCCCCCCCCCEEEECCHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCE IVCADDDIETAGNPGLTKAREAAQAIGALLAVPDFGPERPDGATDFNDLAVACGHGAVLD EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHH CIEAVRSGKAADDGADEITVAETDEQAVERLASLSPMQYDRVRKAEAKRMGVQFGTLDRM HHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH VKDARGEAASEEAAPFEDVEPWPEPVDGAELLSEIARSIRRFIICDPETIAATALWCVAS HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHH WLADSVNVCPILLINAPEKACGKTQLLTVTGKLVPRPAQAAGISPSVLFRMIEKYKPTLL HHHCCCCCCEEEEEECCHHHCCCEEEEEEECCCCCCCHHHCCCCHHHHHHHHHHCCCCEE VDEIETVLTKEAEDLRGLMNAGHTRDSAFVWRSVAVGDDFEPKRFSVFGFKAVAGINADK HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCCEEEEECHHHHHCCCHHH LAETITSRAVVAQMRRKMPHETAERLRHAEPDLFDTLCAKLARWADDNGDAIRVARPNLP HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC DALGDRDQDNWEPLLAVADLAGGTWPDYARGAALKLCNRGGEAAQSTGAELLADIQAVFD HHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH RKGMQRISMADLLAALCEDDEAPWKTWNRGKEMTTRQLGKKLGEYGIKSKVVRIGYDAPK HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCHHCEEEEECCCCC GFDVDQFSDAFARYLSSPDTPLPPVTRSQPNVHAGFDVTERKTVQSRDRNPVTSTESASS CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHH IRAHAAETVEHGKAAGSCDRNSVTPDFSVTNKSLLDKACDRVTDVTEENGDSEEKEIPAT HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC DDEAEADL CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1818755 [H]