| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is rhsA [H]
Identifier: 17547189
GI number: 17547189
Start: 2678417
End: 2681089
Strand: Reverse
Name: rhsA [H]
Synonym: RSc2470
Alternate gene names: 17547189
Gene position: 2681089-2678417 (Counterclockwise)
Preceding gene: 17547192
Following gene: 17547188
Centisome position: 72.14
GC content: 57.31
Gene sequence:
>2673_bases ATGAAAATAGTCCTTGAGTGGCAGCTATGCACTGCTTTCGTCGCAGCGGCTAGGCGTCAAGCGAAACTTGGTTTGAAGAG CGCGCAACTCGGTGTGGCGATAGCGCTGTTTGCTTGTGCCGTGCCACCTGCCTGGAGCGCTAATACTGGCGCCGACGGGC ATGTTTGGAGAGCAGAAAACAATGGCGAGTGGTGGGGGGCTGGCGATAGTCCGGATGCTGCCTGCCGTTCAGCGACCGCC GGGATCAAAGCTCGGTACCCGTGGGATACGCGAGAATATCTCTACCTTGAAAATAAGCAAATCGATGTAGACGGTACCGC AGGCTGCGTCGGGCGATTCAGCAATGGCGTCATCGGGATTATTGGGACGACGGTACGAATCGCTCAATGCGCAGCAGGCT ACGTGACACAGCCTGACGGTTCGTGCATACCGAAAAATCCCGAAGTAAAGACCTGCGCTGTAAGCCACCCGGTGTTCCCG AACACGGGTGTGAAGGTACTGATCGAACGAGACGACATAGGCAGTACCGACTTACCCATATCGCGTGCGTATCGATCGTC AGTGCTTTTCGGTCTGGTCGCCGGTGTGGGCCAATGGTTGTTCAACTGGCAGCGAGAGTTGGACGCTCCCATCGGCACCG CTGATACAACGTCCGCTGCGATCGCCGCGATCCGCGAGGACGGCACCTCGCGCATTTTTCGCAAGAGCGGCAATGCTTGG ACGACGTTCGGCTCCCGAGACACGCTGGCCCGTCTCTCCGATGGAGCCGGCACACTTACTGGCTGGCAATACACCGTAGC CGGGACAGACGCGGTGGAAACCTACGGTACGAATGGAAAGCTGTTGTCGATTCGGGAGCGCAACGGTAGAACCACGACAC TGACATACAACGCCAGCAATCAACTCATCAAGGTTATAGCGGCAACGGGCCGCAGCCTCACTTTTGCGTATGACGCACAA GGGCGAATCATTGGTGTCACGGCTCCCGATGGGGCGATCACCCAGTACGCGTACAACGCCAACGGTATGCTGTCCACCGT CATCTGGACAGATAACACCACACGCCAGTATGTCTACGAGGACACTCGTTTTCCAACCGCCCTGACTGGCGTGATCGACG AAGCTGGCGTGCGGTATGCCACCTACACCTATGACGACCAGGGCCGGGCCATCACGAGTGAGTTGACCGGCGGGGCAGAT CGGTACCAGTTCCAGTACCAATCGGATGGGCAAACGACAGTTCTGATGCCGGACGGCGGCAGCAGCGTCTACGGGTTCCT AAAGCAGAACGGCGTCCTATTGCCGAGGGGAACGAGCGCGTCTTGCGCTCTGTGCGGCAGCTCCGCACAGAGCGCGGACT ACGACGCCAGCGGCAATGCAACGCGCAAGGTCGGCTATGACGGTACGGTGACGACGTATGCCTATGACTCTCTGGGCCGG CAGCTGCAACGTGTTGATGCGGTAGGGACTGCAAACGCGACAACGCTCACAACGGAATGGCATCCCACTTGGAATTTGCC CGTTAGGGCCGCTTCACCCGGCAAGTTGGAGACGTTCACCTACGATACGGCTGGCAATCTCGTGTCCTACACCACCGTGG CGACGAATGATGCCAGTGGGTCTGCTGGATTTGGTGCAGCGCCAACGGGGGATGTGATCAAAACGGACTGGACATACGAT AGCGCTGGTCGGCTGATGACCGCGTACGAGTTGACTGGCGCCGCAGCCACGGGTTCATGGGCTTTGACCTATGACGCCCA GGGTAACGTACAAACGTTAACCGATCCGGATGGCCGAACGGCCACCGCCGTAAAGTACGACGCCGCAGGCAGGTTGCTGG AAGCAGTCAATACGGATGGCGAGCGGACGAAATACAGCTACAACGCTCGCGGTTTGCTTCTGACCTATGCCGTCGGCGGC GCCGTCGTGAACTATGACTACGATGCCAACGGCCTGCTCACTGCTATTCGTGGCCCCGGAGACTACTACTTTGGCTTTAA GTACGATACCGCTCACCGCTTGATTTCGCTTCTGACTCCAGTAGGGCAGACGTCTCTGGTCAGCATGGCGAATCCTGTTC AAGCCGCTAAGCTCGCGGCGCGTGCGGAGGTTCAGCGCACGGCAAAGTTGTCGGTGGTTGAGCGTTTGTGGATCACAATC AAATCGTGGTTGTCCAGATTGCTTGGCCTTGTCGTTGGGAACGCCACCGCGAACCCACTGTTGGGTGAAATCCAGGTGGT GCCTCCCATCCCAGCGCAAGTTGGCGGAGCGATTGGTGGCACGAGCAGTGGTAACTCAGATTTGGACGAGTTGCTGGGTA CCGGCCGCCCGATGCCTCGACCTGACCCACTGCTCAACGAGTTCATCAAGATGGTTCGAAACATCACTGGTGCAAATCAG CGTACCAGTGAGGCTTGTGAGGATGATTCGAGGTGCCAGTCAGCGAAGCAAGATGCGTCAAGTCATTACTGGACTTTGAC TCAGAAACGCATTCCTCAATATCTAAGCGGGGGTACTGGGGGGCACGATGTGGGGCATTATAATGCTATTATTCAGCGCC AAATCGGTCTTAGGAAGGCAATTAATAAGGTCAAGCTATACTGTCGCCCCTTGCCTGTCGAGCTTCCGGAATGGGAGCGT GTTGCAAATCAAGAAATCCCCATTCTTCATTGA
Upstream 100 bases:
>100_bases GTGCTGGAATTCACATTTTCTAAAATCTGAATAAAAACGAATCAAAAGCTGCGGAGGACGTGGATAACATAAAGTGTCCC ATTCGCTTTTAGGGGGGAGA
Downstream 100 bases:
>100_bases TGGACATGAGTGAGATAAATAAATGATTCCGGTTTGTCTAATGAATTACATGCTGTCTCCAGAAATGGATCTATCTGAGA TAAAAATCAAGAAATTTCGG
Product: rhs-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MKIVLEWQLCTAFVAAARRQAKLGLKSAQLGVAIALFACAVPPAWSANTGADGHVWRAENNGEWWGAGDSPDAACRSATA GIKARYPWDTREYLYLENKQIDVDGTAGCVGRFSNGVIGIIGTTVRIAQCAAGYVTQPDGSCIPKNPEVKTCAVSHPVFP NTGVKVLIERDDIGSTDLPISRAYRSSVLFGLVAGVGQWLFNWQRELDAPIGTADTTSAAIAAIREDGTSRIFRKSGNAW TTFGSRDTLARLSDGAGTLTGWQYTVAGTDAVETYGTNGKLLSIRERNGRTTTLTYNASNQLIKVIAATGRSLTFAYDAQ GRIIGVTAPDGAITQYAYNANGMLSTVIWTDNTTRQYVYEDTRFPTALTGVIDEAGVRYATYTYDDQGRAITSELTGGAD RYQFQYQSDGQTTVLMPDGGSSVYGFLKQNGVLLPRGTSASCALCGSSAQSADYDASGNATRKVGYDGTVTTYAYDSLGR QLQRVDAVGTANATTLTTEWHPTWNLPVRAASPGKLETFTYDTAGNLVSYTTVATNDASGSAGFGAAPTGDVIKTDWTYD SAGRLMTAYELTGAAATGSWALTYDAQGNVQTLTDPDGRTATAVKYDAAGRLLEAVNTDGERTKYSYNARGLLLTYAVGG AVVNYDYDANGLLTAIRGPGDYYFGFKYDTAHRLISLLTPVGQTSLVSMANPVQAAKLAARAEVQRTAKLSVVERLWITI KSWLSRLLGLVVGNATANPLLGEIQVVPPIPAQVGGAIGGTSSGNSDLDELLGTGRPMPRPDPLLNEFIKMVRNITGANQ RTSEACEDDSRCQSAKQDASSHYWTLTQKRIPQYLSGGTGGHDVGHYNAIIQRQIGLRKAINKVKLYCRPLPVELPEWER VANQEIPILH
Sequences:
>Translated_890_residues MKIVLEWQLCTAFVAAARRQAKLGLKSAQLGVAIALFACAVPPAWSANTGADGHVWRAENNGEWWGAGDSPDAACRSATA GIKARYPWDTREYLYLENKQIDVDGTAGCVGRFSNGVIGIIGTTVRIAQCAAGYVTQPDGSCIPKNPEVKTCAVSHPVFP NTGVKVLIERDDIGSTDLPISRAYRSSVLFGLVAGVGQWLFNWQRELDAPIGTADTTSAAIAAIREDGTSRIFRKSGNAW TTFGSRDTLARLSDGAGTLTGWQYTVAGTDAVETYGTNGKLLSIRERNGRTTTLTYNASNQLIKVIAATGRSLTFAYDAQ GRIIGVTAPDGAITQYAYNANGMLSTVIWTDNTTRQYVYEDTRFPTALTGVIDEAGVRYATYTYDDQGRAITSELTGGAD RYQFQYQSDGQTTVLMPDGGSSVYGFLKQNGVLLPRGTSASCALCGSSAQSADYDASGNATRKVGYDGTVTTYAYDSLGR QLQRVDAVGTANATTLTTEWHPTWNLPVRAASPGKLETFTYDTAGNLVSYTTVATNDASGSAGFGAAPTGDVIKTDWTYD SAGRLMTAYELTGAAATGSWALTYDAQGNVQTLTDPDGRTATAVKYDAAGRLLEAVNTDGERTKYSYNARGLLLTYAVGG AVVNYDYDANGLLTAIRGPGDYYFGFKYDTAHRLISLLTPVGQTSLVSMANPVQAAKLAARAEVQRTAKLSVVERLWITI KSWLSRLLGLVVGNATANPLLGEIQVVPPIPAQVGGAIGGTSSGNSDLDELLGTGRPMPRPDPLLNEFIKMVRNITGANQ RTSEACEDDSRCQSAKQDASSHYWTLTQKRIPQYLSGGTGGHDVGHYNAIIQRQIGLRKAINKVKLYCRPLPVELPEWER VANQEIPILH >Mature_890_residues MKIVLEWQLCTAFVAAARRQAKLGLKSAQLGVAIALFACAVPPAWSANTGADGHVWRAENNGEWWGAGDSPDAACRSATA GIKARYPWDTREYLYLENKQIDVDGTAGCVGRFSNGVIGIIGTTVRIAQCAAGYVTQPDGSCIPKNPEVKTCAVSHPVFP NTGVKVLIERDDIGSTDLPISRAYRSSVLFGLVAGVGQWLFNWQRELDAPIGTADTTSAAIAAIREDGTSRIFRKSGNAW TTFGSRDTLARLSDGAGTLTGWQYTVAGTDAVETYGTNGKLLSIRERNGRTTTLTYNASNQLIKVIAATGRSLTFAYDAQ GRIIGVTAPDGAITQYAYNANGMLSTVIWTDNTTRQYVYEDTRFPTALTGVIDEAGVRYATYTYDDQGRAITSELTGGAD RYQFQYQSDGQTTVLMPDGGSSVYGFLKQNGVLLPRGTSASCALCGSSAQSADYDASGNATRKVGYDGTVTTYAYDSLGR QLQRVDAVGTANATTLTTEWHPTWNLPVRAASPGKLETFTYDTAGNLVSYTTVATNDASGSAGFGAAPTGDVIKTDWTYD SAGRLMTAYELTGAAATGSWALTYDAQGNVQTLTDPDGRTATAVKYDAAGRLLEAVNTDGERTKYSYNARGLLLTYAVGG AVVNYDYDANGLLTAIRGPGDYYFGFKYDTAHRLISLLTPVGQTSLVSMANPVQAAKLAARAEVQRTAKLSVVERLWITI KSWLSRLLGLVVGNATANPLLGEIQVVPPIPAQVGGAIGGTSSGNSDLDELLGTGRPMPRPDPLLNEFIKMVRNITGANQ RTSEACEDDSRCQSAKQDASSHYWTLTQKRIPQYLSGGTGGHDVGHYNAIIQRQIGLRKAINKVKLYCRPLPVELPEWER VANQEIPILH
Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RHS family [H]
Homologues:
Organism=Escherichia coli, GI1790020, Length=445, Percent_Identity=26.2921348314607, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI48994942, Length=445, Percent_Identity=26.2921348314607, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1786917, Length=386, Percent_Identity=26.6839378238342, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1786706, Length=425, Percent_Identity=25.6470588235294, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001826 - InterPro: IPR022385 - InterPro: IPR006530 [H]
Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]
EC number: NA
Molecular weight: Translated: 95304; Mature: 95304
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVLEWQLCTAFVAAARRQAKLGLKSAQLGVAIALFACAVPPAWSANTGADGHVWRAEN CEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC NGEWWGAGDSPDAACRSATAGIKARYPWDTREYLYLENKQIDVDGTAGCVGRFSNGVIGI CCCEECCCCCCHHHHHHHCCCCEEECCCCCCEEEEEECCEEECCCCCHHHHHCCCCEEEE IGTTVRIAQCAAGYVTQPDGSCIPKNPEVKTCAVSHPVFPNTGVKVLIERDDIGSTDLPI EECHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCH SRAYRSSVLFGLVAGVGQWLFNWQRELDAPIGTADTTSAAIAAIREDGTSRIFRKSGNAW HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCEE TTFGSRDTLARLSDGAGTLTGWQYTVAGTDAVETYGTNGKLLSIRERNGRTTTLTYNASN EECCCCCHHHHHCCCCCCCCCEEEEEECCCHHHHCCCCCCEEEEEECCCCEEEEEECCCC QLIKVIAATGRSLTFAYDAQGRIIGVTAPDGAITQYAYNANGMLSTVIWTDNTTRQYVYE CEEEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCCEEEEE DTRFPTALTGVIDEAGVRYATYTYDDQGRAITSELTGGADRYQFQYQSDGQTTVLMPDGG CCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEHHHCCCCCEEEEEEECCCCEEEEEECCC SSVYGFLKQNGVLLPRGTSASCALCGSSAQSADYDASGNATRKVGYDGTVTTYAYDSLGR CHHHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEEHHHHHH QLQRVDAVGTANATTLTTEWHPTWNLPVRAASPGKLETFTYDTAGNLVSYTTVATNDASG HHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCC SAGFGAAPTGDVIKTDWTYDSAGRLMTAYELTGAAATGSWALTYDAQGNVQTLTDPDGRT CCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCE ATAVKYDAAGRLLEAVNTDGERTKYSYNARGLLLTYAVGGAVVNYDYDANGLLTAIRGPG EEEEEECHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCEEEEEEECCCCEEEEEECCC DYYFGFKYDTAHRLISLLTPVGQTSLVSMANPVQAAKLAARAEVQRTAKLSVVERLWITI CEEEEEEECHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSWLSRLLGLVVGNATANPLLGEIQVVPPIPAQVGGAIGGTSSGNSDLDELLGTGRPMPR HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCC PDPLLNEFIKMVRNITGANQRTSEACEDDSRCQSAKQDASSHYWTLTQKRIPQYLSGGTG CCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCC GHDVGHYNAIIQRQIGLRKAINKVKLYCRPLPVELPEWERVANQEIPILH CCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHCCCCCCCCC >Mature Secondary Structure MKIVLEWQLCTAFVAAARRQAKLGLKSAQLGVAIALFACAVPPAWSANTGADGHVWRAEN CEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC NGEWWGAGDSPDAACRSATAGIKARYPWDTREYLYLENKQIDVDGTAGCVGRFSNGVIGI CCCEECCCCCCHHHHHHHCCCCEEECCCCCCEEEEEECCEEECCCCCHHHHHCCCCEEEE IGTTVRIAQCAAGYVTQPDGSCIPKNPEVKTCAVSHPVFPNTGVKVLIERDDIGSTDLPI EECHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCH SRAYRSSVLFGLVAGVGQWLFNWQRELDAPIGTADTTSAAIAAIREDGTSRIFRKSGNAW HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCEE TTFGSRDTLARLSDGAGTLTGWQYTVAGTDAVETYGTNGKLLSIRERNGRTTTLTYNASN EECCCCCHHHHHCCCCCCCCCEEEEEECCCHHHHCCCCCCEEEEEECCCCEEEEEECCCC QLIKVIAATGRSLTFAYDAQGRIIGVTAPDGAITQYAYNANGMLSTVIWTDNTTRQYVYE CEEEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCCCEEEEE DTRFPTALTGVIDEAGVRYATYTYDDQGRAITSELTGGADRYQFQYQSDGQTTVLMPDGG CCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEHHHCCCCCEEEEEEECCCCEEEEEECCC SSVYGFLKQNGVLLPRGTSASCALCGSSAQSADYDASGNATRKVGYDGTVTTYAYDSLGR CHHHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEEHHHHHH QLQRVDAVGTANATTLTTEWHPTWNLPVRAASPGKLETFTYDTAGNLVSYTTVATNDASG HHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCC SAGFGAAPTGDVIKTDWTYDSAGRLMTAYELTGAAATGSWALTYDAQGNVQTLTDPDGRT CCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCE ATAVKYDAAGRLLEAVNTDGERTKYSYNARGLLLTYAVGGAVVNYDYDANGLLTAIRGPG EEEEEECHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCEEEEEEECCCCEEEEEECCC DYYFGFKYDTAHRLISLLTPVGQTSLVSMANPVQAAKLAARAEVQRTAKLSVVERLWITI CEEEEEEECHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSWLSRLLGLVVGNATANPLLGEIQVVPPIPAQVGGAIGGTSSGNSDLDELLGTGRPMPR HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCC PDPLLNEFIKMVRNITGANQRTSEACEDDSRCQSAKQDASSHYWTLTQKRIPQYLSGGTG CCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCC GHDVGHYNAIIQRQIGLRKAINKVKLYCRPLPVELPEWERVANQEIPILH CCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2403547; 8041620; 9278503; 7934896 [H]