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The map label for this gene is radC [C]

Identifier: 17547163

GI number: 17547163

Start: 2650253

End: 2650927

Strand: Direct

Name: radC [C]

Synonym: RSc2444

Alternate gene names: 17547163

Gene position: 2650253-2650927 (Clockwise)

Preceding gene: 17547155

Following gene: 17547164

Centisome position: 71.31

GC content: 67.7

Gene sequence:

>675_bases
ATGGCAATCGCTGACTGGCCGGCCCACGAGCGGCCGCGTGAAAAACTGCTCACCCAAGGTCCCGCCGCGCTGTCCGACGC
GGAATTGCTGGCGATCTTCCTGCGCGTCGGCATGCCGGGCAAGAGTGCGGTCGATCTCGCCCGCGAGCTGCTGGCCCACT
TCGGCTCGCTCGGGCGCCTGTGTCATGCGTCGCGGCGGGAGTTCTCCGCCATCCACGGCATGGGGCCGGCCAAGTACGCC
CAGTTGCACGCGCTGCTGGAGGTGGCGCGGCGCGCGCTCAAGGAAGAAATCGCGTACGGCCAGACCCTCGAATCCCCGCA
GAGCGTCAAGGATTTCCTGCGGCTCACGCTCGGCCACCGCCCGCAGGAAGTGTTCGCCTGCCTGTTCCTGGACGTGCGGC
ACCGGCTCATCGCCTGGGAAGAGCTGTTCCAGGGAACGCTGACCGAAGCCCGCGTCTACCCGCGCGAGATCGCCAAGCGG
GCCCTGCACCACAACGCCTCGGCGCTGATCCTGTCGCACAACCACCCGACCGGCCATGTCGAGCCCAGCGAATCGGACCT
GGTGCTCACCCGTGAGCTGTGCCGGGCACTCGCGCTGCTCGACGTGAGAGTCCTGGACCACATGATCGTCGGCCGCGCCG
AGGTCTACAGCTTCCTGGAGCACGGCAAAATGTAG

Upstream 100 bases:

>100_bases
GTAACCAGGTATTGTACGTCAGCACCACCCCTCCCGCAGACGCGCCGGACGCTGCACGCGGCGCCGCCTCGCGGCTTTGC
TCATCGCATTCCCACGTTCC

Downstream 100 bases:

>100_bases
CGCCAACGCCGCGCGTGTCGGCATTCCATTGATCTCGTTGATTCCACAGTGGTTTTGTGTGTATAATCCGCGTTTCGCTG
AAGTGTCCCACCTCTACAGT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRLCHASRREFSAIHGMGPAKYA
QLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHRPQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKR
ALHHNASALILSHNHPTGHVEPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM

Sequences:

>Translated_224_residues
MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRLCHASRREFSAIHGMGPAKYA
QLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHRPQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKR
ALHHNASALILSHNHPTGHVEPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM
>Mature_223_residues
AIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRLCHASRREFSAIHGMGPAKYAQ
LHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHRPQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRA
LHHNASALILSHNHPTGHVEPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=211, Percent_Identity=45.9715639810426, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI2367100, Length=139, Percent_Identity=46.7625899280576, Blast_Score=126, Evalue=9e-31,
Organism=Escherichia coli, GI1788997, Length=123, Percent_Identity=46.3414634146341, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788312, Length=149, Percent_Identity=42.2818791946309, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2444_RALSO (Q8XWN0)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_520565.1
- ProteinModelPortal:   Q8XWN0
- SMR:   Q8XWN0
- GeneID:   1221291
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc2444
- NMPDR:   fig|267608.1.peg.2444
- HOGENOM:   HBG751042
- OMA:   GISKYTQ
- ProtClustDB:   PRK00024
- BioCyc:   RSOL267608:RSC2444-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25108; Mature: 24977

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
EPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL
CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
EPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852