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The map label for this gene is lptF [H]

Identifier: 17547135

GI number: 17547135

Start: 2621051

End: 2622169

Strand: Direct

Name: lptF [H]

Synonym: RSc2416

Alternate gene names: 17547135

Gene position: 2621051-2622169 (Clockwise)

Preceding gene: 17547131

Following gene: 17547136

Centisome position: 70.53

GC content: 66.13

Gene sequence:

>1119_bases
ATGATTTTCGAACAAGCCCTGCGACGCGAGCTTTCCTTTACTGCCGGCGCCGTCTTCCTCGTCCTGCTCACCTTCATGCT
GACCACGCTGGTGATCCGCATCCTGGGCATGGCGGCCAACGGCGAGGCCAGTCCCAACGACGTACTGTTGCTGATCGGCC
TGGCCGCGCTCGGCTACCTGGCGATCCTGCTATGCGCCACGCTGTTCATCTCGGTGCTGCTGGTGCTCACGCGCTGGTAC
AAGGATTCCGAGATGGTGGTGTGGTTCACCGCCGGCCTCAGCCTGACCGACTTCATCCGCCCGGTGCTGCGCTTCTCGCT
ACCGTTCGTGGTGCTGGTGGGGCTGCTGGCGCTGTTCGGCTGGCCGTGGGCCAACCAGCAGAGCGCACTGTTCCGCGACC
GCTTCGAGCAGCGCGACGTGCTGTCGATGATCTCCGCCGGCCGCTTCATCGAACCGGCGCACGGCAACTACGTGCTGTTC
ATCGAAGGCGTCGATGCCGGCATGAAGCACGCGCGCAATCTCTTCGTCGCCAATGCCGAGCAGGACAAGATCGGCGTGGC
GCTGGCCAAGACCGGCGAGTTCAAGGCCGGCCCCAACGGCGATCGCTACGTGGTGCTCGACAAGGGCCGCCGCTACGAAG
GCACGCCCGGCCAGCTGGACTACCGCATCGTCGAATTCGACCGCTACGGCGTGAAGGTGGCCAACAAGCCGCCCCAGGCC
GACGCCAACCTGCCCACCAAGAGCCGCCCGACCACCGAGCTGCTGTCCAACCCGACCCCTGAGAACATGGGCGAGCTGGT
CTGGCGCATCGGCCTGCCGCTGCTGGCGCTCAACTTCGTGCTGATCGCGATCCCGCTGGCCTACGTCAACCCGCGCCTGG
GCCGCTACACCCCGATGATCTTCGCCGTGCTGATCTACCTGACGTACTCCAACCTGCTCAACCTGTCGCAGGCATGGGTC
GCGCAGGGCAAGATGAGCGCGATGCTGGCCTGGTGGCCGATCCACCTGGCGGCGTTCGTCTGCGCCGGGCTGCTGTTCCG
CTTCCGCCACTACAGCGCGGCGGGCCTCAAGGGCATCTTCGCCCTGCTCGGCTTCGCGCCGAAGAAGGCGGGCGCATGA

Upstream 100 bases:

>100_bases
TTTGAGGCGAGTCAACGAAAGCCCACATTATCCGCGATTTTGCGCGTGGGCTCCGATGGTACGCACATCGGCCGGACTTC
GCTCCCCATCCCGCATCCGC

Downstream 100 bases:

>100_bases
TGAAGATCCTGAAGATGCAGGTCTACGAAAAGTACTTCGCGCGCCAGATCTACGGCGTGTTCGTCTTCATCCTGTTCGCG
GTGCTGGCGCTGTTCATCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MIFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLAILLCATLFISVLLVLTRWY
KDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGWPWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLF
IEGVDAGMKHARNLFVANAEQDKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQA
DANLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWV
AQGKMSAMLAWWPIHLAAFVCAGLLFRFRHYSAAGLKGIFALLGFAPKKAGA

Sequences:

>Translated_372_residues
MIFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLAILLCATLFISVLLVLTRWY
KDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGWPWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLF
IEGVDAGMKHARNLFVANAEQDKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQA
DANLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWV
AQGKMSAMLAWWPIHLAAFVCAGLLFRFRHYSAAGLKGIFALLGFAPKKAGA
>Mature_372_residues
MIFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLAILLCATLFISVLLVLTRWY
KDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGWPWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLF
IEGVDAGMKHARNLFVANAEQDKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQA
DANLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMIFAVLIYLTYSNLLNLSQAWV
AQGKMSAMLAWWPIHLAAFVCAGLLFRFRHYSAAGLKGIFALLGFAPKKAGA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=309, Percent_Identity=27.1844660194175, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41190; Mature: 41190

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
AILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
WPWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCHHHHHHHHEEEECCC
QDKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQA
CCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCEEECCCCCCC
DANLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMI
CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAVLIYLTYSNLLNLSQAWVAQGKMSAMLAWWPIHLAAFVCAGLLFRFRHYSAAGLKGIF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ALLGFAPKKAGA
HHHCCCCCCCCC
>Mature Secondary Structure
MIFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
AILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
WPWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEECCCHHHHHHHHEEEECCC
QDKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQA
CCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCEEECCCCCCC
DANLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNPRLGRYTPMI
CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FAVLIYLTYSNLLNLSQAWVAQGKMSAMLAWWPIHLAAFVCAGLLFRFRHYSAAGLKGIF
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ALLGFAPKKAGA
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]