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The map label for this gene is 17546960

Identifier: 17546960

GI number: 17546960

Start: 2434043

End: 2434942

Strand: Direct

Name: 17546960

Synonym: RSc2241

Alternate gene names: NA

Gene position: 2434043-2434942 (Clockwise)

Preceding gene: 17546956

Following gene: 17546962

Centisome position: 65.49

GC content: 64.89

Gene sequence:

>900_bases
ATGTATCAACTGCAGGATCTCCTGACCGACGCGCAGATCAACGCGCTCGATGCCCAACCGTACGACATGGTCGTCGTCGA
GGCCGGCAATACGGTCAAGAACCAGGAGACGTTCAACACGGCCGGCATGGTCACGCGCCTGCATACCAAGGCCGACGGCT
CGCCGCGCAAGGTGATCGCCTACATCGACATCGGCCAGGCAGAGAGCTTCCGCACGTATTGGATCGACAATCAATGGAAA
ACGCCGACCGCCACCAAGCCCGGCGTACCCGATTTCATCCTGACGGCGGACCCGGACGGCTGGGCCGATGACTATCCGGT
GGCCTACTGGGACCAACGCTGGCAAGACCTGTGGCTCGGCACCAACGGCGCCGTGGCACAGCTCGCGCGCGAAGGTTTCG
ACGGCGTCTATCTGGATTGGGTGGAGGGCTACACCAATGCCAAGGTGGTGGCCGCGGCCAAGAAGGCGGGCGTGAATCCG
GCCAAGGCGATGGTGGATTTCATCGCCAAGATCCGCGCTGCGGGCCGTGCGATCAACCCGCAGTTTGCGGTGATCCAGCA
GAATGCGCCTGAGCTGATCGACGCCGTCGGTGCAGCCAAGCTGCTGCCGAACCTCGATGCGATCTCGCAGGAAGACACGT
GGTTCGGCGGGGACGCCGGCGCAAGCTGGGGCGATGCGAGCGGTACCGACCAGGCCACCGAGTCCGCCGACACGCAGTGG
ACCATCGAGCAACTGCAGAAGCATTGCGCGGGCGGCCTGCCGGTCTTCACGATCGACTACGCGCTGACGTCCCCGAACCC
GCGGACGGTGTACACCACCTCGCGCAGCCTGGGCTTCCGCCCGCTGGTCTCGCGCGTCTCGCTGTCCAAGCCGACGACTA
CGCCGCCCTGGAACTACTGA

Upstream 100 bases:

>100_bases
CTCAAGCACCTCAAGCAACGCCAACGTTGCGGCATCGGCCGCGGCTGTAGCCGTCTGCGGCGCGAACAGCACGTCGCCGC
TCGCGGGCGTGCGGACATGG

Downstream 100 bases:

>100_bases
CGTTGCCGACGGTGTTCAGTGCCCTCGCCGGTGCATCGGCAAACGGCAGGCCGACGTAGTTCTCGGCCAACGTGCGTGCC
GCGGCCAGCGAGGTCGTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MYQLQDLLTDAQINALDAQPYDMVVVEAGNTVKNQETFNTAGMVTRLHTKADGSPRKVIAYIDIGQAESFRTYWIDNQWK
TPTATKPGVPDFILTADPDGWADDYPVAYWDQRWQDLWLGTNGAVAQLAREGFDGVYLDWVEGYTNAKVVAAAKKAGVNP
AKAMVDFIAKIRAAGRAINPQFAVIQQNAPELIDAVGAAKLLPNLDAISQEDTWFGGDAGASWGDASGTDQATESADTQW
TIEQLQKHCAGGLPVFTIDYALTSPNPRTVYTTSRSLGFRPLVSRVSLSKPTTTPPWNY

Sequences:

>Translated_299_residues
MYQLQDLLTDAQINALDAQPYDMVVVEAGNTVKNQETFNTAGMVTRLHTKADGSPRKVIAYIDIGQAESFRTYWIDNQWK
TPTATKPGVPDFILTADPDGWADDYPVAYWDQRWQDLWLGTNGAVAQLAREGFDGVYLDWVEGYTNAKVVAAAKKAGVNP
AKAMVDFIAKIRAAGRAINPQFAVIQQNAPELIDAVGAAKLLPNLDAISQEDTWFGGDAGASWGDASGTDQATESADTQW
TIEQLQKHCAGGLPVFTIDYALTSPNPRTVYTTSRSLGFRPLVSRVSLSKPTTTPPWNY
>Mature_299_residues
MYQLQDLLTDAQINALDAQPYDMVVVEAGNTVKNQETFNTAGMVTRLHTKADGSPRKVIAYIDIGQAESFRTYWIDNQWK
TPTATKPGVPDFILTADPDGWADDYPVAYWDQRWQDLWLGTNGAVAQLAREGFDGVYLDWVEGYTNAKVVAAAKKAGVNP
AKAMVDFIAKIRAAGRAINPQFAVIQQNAPELIDAVGAAKLLPNLDAISQEDTWFGGDAGASWGDASGTDQATESADTQW
TIEQLQKHCAGGLPVFTIDYALTSPNPRTVYTTSRSLGFRPLVSRVSLSKPTTTPPWNY

Specific function: Unknown

COG id: COG2342

COG function: function code G; Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016063
- InterPro:   IPR017853
- InterPro:   IPR016062
- InterPro:   IPR004352 [H]

Pfam domain/function: PF03537 DUF297 [H]

EC number: NA

Molecular weight: Translated: 32680; Mature: 32680

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQLQDLLTDAQINALDAQPYDMVVVEAGNTVKNQETFNTAGMVTRLHTKADGSPRKVIA
CCCHHHHHCCCCCEEECCCCCEEEEEECCCCCCCCCHHCHHHHEEEEECCCCCCCCEEEE
YIDIGQAESFRTYWIDNQWKTPTATKPGVPDFILTADPDGWADDYPVAYWDQRWQDLWLG
EEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEC
TNGAVAQLAREGFDGVYLDWVEGYTNAKVVAAAKKAGVNPAKAMVDFIAKIRAAGRAINP
CCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCC
QFAVIQQNAPELIDAVGAAKLLPNLDAISQEDTWFGGDAGASWGDASGTDQATESADTQW
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHH
TIEQLQKHCAGGLPVFTIDYALTSPNPRTVYTTSRSLGFRPLVSRVSLSKPTTTPPWNY
HHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MYQLQDLLTDAQINALDAQPYDMVVVEAGNTVKNQETFNTAGMVTRLHTKADGSPRKVIA
CCCHHHHHCCCCCEEECCCCCEEEEEECCCCCCCCCHHCHHHHEEEEECCCCCCCCEEEE
YIDIGQAESFRTYWIDNQWKTPTATKPGVPDFILTADPDGWADDYPVAYWDQRWQDLWLG
EEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEC
TNGAVAQLAREGFDGVYLDWVEGYTNAKVVAAAKKAGVNPAKAMVDFIAKIRAAGRAINP
CCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCC
QFAVIQQNAPELIDAVGAAKLLPNLDAISQEDTWFGGDAGASWGDASGTDQATESADTQW
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHH
TIEQLQKHCAGGLPVFTIDYALTSPNPRTVYTTSRSLGFRPLVSRVSLSKPTTTPPWNY
HHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]