Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 17546909

GI number: 17546909

Start: 2372599

End: 2373324

Strand: Direct

Name: yebC [C]

Synonym: RSc2190

Alternate gene names: 17546909

Gene position: 2372599-2373324 (Clockwise)

Preceding gene: 17546907

Following gene: 17546910

Centisome position: 63.84

GC content: 64.19

Gene sequence:

>726_bases
ATGGCCGGTCATTCCAAATGGGCCAATATCAAGCATAAGAAAGCCGCTGCCGACGCCAAGCGCGGCAAGATTTGGACGCG
CCTGATCAAGGAAATCACCGTCGCGGCCCGGCTGGGCGGCGGCGACGTCGACTCCAACCCGCGCCTGCGCCTGGCCATCG
ACAAGGGCACCGACGCCAACATGCCCAAGGACAACATCCAGCGCGCCATCCAGCGCGGCGTGGGTGGCCTGGAAGGCGCG
CACTACGAAGAAATCCGCTACGAAGGCTACGGCATCAGCGGCGCGGCCATCATCGTCGACTGCATGACCGACAACCGCAC
GCGCACCGTGGCCGAAGTGCGTCACGCGTTCGACAAGCACGGCGGCAACATGGGCACGCAGGGTTCGGTGGCCTTCATGT
TCGACCATGTCGGCCAGTTCATCTTTGCGCCCGGCACGCCGGAAGACAAGCTGATGGATGCAGCGCTGGAAGCCGGCGCC
GAAGACGTCGTCACCAACGACGACGGCTCGATCGAAGTCCTCTGCCCGCCCAACGATTTCGCCAAGGTCAAGGCCGCGCT
GGAAGGCGCCGGCTTCAAGGCGGAGCTGGCCGAGGTCATCATGAAGCCGCAGACCGAAGTCGAGTTCACCGGCGACGACG
CGGCCAAGATGCAGAAGCTGCTCGACGCCCTGGAGAACCTGGACGACGTGCAAGAGGTGTACACCAACGCCGTCATCGGG
GAGTAA

Upstream 100 bases:

>100_bases
TAAAATCCGCGACCGATTATAGAGCGTCACCCCGGCGTCAAACCGCCGAACCGCTGTCTGCGCGCGCTCGATTCCATTGC
ATTTCCGCTCGGAGAGTTTC

Downstream 100 bases:

>100_bases
CACCCGAGACGCGCACACAACGGCGATCGGACCCACGATCGCCGTTTGTTTTTTCAGAATTCGAGTCTCTCAGCAGGTTA
AAGCTATGAAAGTGATGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKGTDANMPKDNIQRAIQRGVGGLEGA
HYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFDKHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGA
EDVVTNDDGSIEVLCPPNDFAKVKAALEGAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAVIG
E

Sequences:

>Translated_241_residues
MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKGTDANMPKDNIQRAIQRGVGGLEGA
HYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFDKHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGA
EDVVTNDDGSIEVLCPPNDFAKVKAALEGAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAVIG
E
>Mature_240_residues
AGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKGTDANMPKDNIQRAIQRGVGGLEGAH
YEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFDKHGGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGAE
DVVTNDDGSIEVLCPPNDFAKVKAALEGAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAVIGE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=245, Percent_Identity=26.530612244898, Blast_Score=104, Evalue=8e-23,
Organism=Escherichia coli, GI1788171, Length=241, Percent_Identity=57.6763485477178, Blast_Score=278, Evalue=2e-76,
Organism=Escherichia coli, GI1788294, Length=234, Percent_Identity=41.025641025641, Blast_Score=155, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17556100, Length=245, Percent_Identity=24.4897959183673, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=35.2272727272727, Blast_Score=128, Evalue=9e-31,
Organism=Drosophila melanogaster, GI24583305, Length=250, Percent_Identity=29.6, Blast_Score=100, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2190_RALSO (Q8XXC5)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_520311.1
- ProteinModelPortal:   Q8XXC5
- SMR:   Q8XXC5
- GeneID:   1221034
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc2190
- NMPDR:   fig|267608.1.peg.2190
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   RSOL267608:RSC2190-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 25972; Mature: 25840

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKGTDAN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
MPKDNIQRAIQRGVGGLEGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFDKH
CCHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC
GGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGAEDVVTNDDGSIEVLCPPNDF
CCCCCCCCCHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEECCCHH
AKVKAALEGAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAVIG
HHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHCC
E
C
>Mature Secondary Structure 
AGHSKWANIKHKKAAADAKRGKIWTRLIKEITVAARLGGGDVDSNPRLRLAIDKGTDAN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
MPKDNIQRAIQRGVGGLEGAHYEEIRYEGYGISGAAIIVDCMTDNRTRTVAEVRHAFDKH
CCHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC
GGNMGTQGSVAFMFDHVGQFIFAPGTPEDKLMDAALEAGAEDVVTNDDGSIEVLCPPNDF
CCCCCCCCCHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEECCCHH
AKVKAALEGAGFKAELAEVIMKPQTEVEFTGDDAAKMQKLLDALENLDDVQEVYTNAVIG
HHHHHHHHCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852