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The map label for this gene is ybgJ [H]

Identifier: 17546890

GI number: 17546890

Start: 2353871

End: 2354518

Strand: Reverse

Name: ybgJ [H]

Synonym: RSc2171

Alternate gene names: 17546890

Gene position: 2354518-2353871 (Counterclockwise)

Preceding gene: 17546891

Following gene: 17546889

Centisome position: 63.35

GC content: 72.07

Gene sequence:

>648_bases
TTGCAGTGCACGATTCACCGGCTGGGCGAACTGGCGCTGTTGTGCGAAGTGCCGCCGCCGGCGACCTTGACTTGCCAGCA
GCGCATCTGGGCGATGGCCTCGCGCGCGTCCGAGTGGGCGGGCGTCATCGACGTGGTGCCGGGCATGAACAACCTGACGC
TCGTCTTCGGGCCGCAGGCCGATGCGCAGGCGCTGACCGCGCTGCTGCGCGAGGCGTGGCAAGAGAGCGGCGCGCTGATC
GCCGACGGCAAGCGGATCGACATCGAAGTCGCCTACGGCGGTGACGACGGCCCGGACCTGCGCGATGTCGCGGCCCACAC
GGGCCTGAGCCCCGCGGAGGTAGTGCGCCGCCATACCGCGCCCGAATATATCGTCTACTTCCTGGGCTTCCTGCCGGGCT
TCGCCTACATGGGCGGGCTCGACAAGTCGCTCGCCACGCCGCGCCGCGCGGAGCCGCGCATGGCGGTGCCGGCCGGGTCG
GTCGGCATCGGCGGCGAGCAGACCGGCATCTACCCGGCCGCCTCCCCCGGCGGCTGGCAATTGCTCGGCCGCACGGACGC
GGCGCTGTTCCTGCCCCAGCGCGACCCGCCGGCGCTGCTGGCGCCCGGAGACCGCATCCGCTTTGTCGCCTCGAAGGTGC
ACGCATGA

Upstream 100 bases:

>100_bases
TTATACATAATTTACCGACATTTTATTAACGTATCGATTTGGATTCAGCGCCCCTTTCTCGATATCTTCCGAGCGGGGCC
CATGACGAACGGGGGCCAAG

Downstream 100 bases:

>100_bases
GCCGGCCCACTTCCCGCGCCGCGCCGGCCTTGATCGAGATCGTGCGGGCCGGCGTGCTGACGTCGGTGCAGGACCTCGGC
CGCACCGGCTATCGCCGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MQCTIHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFGPQADAQALTALLREAWQESGALI
ADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTAPEYIVYFLGFLPGFAYMGGLDKSLATPRRAEPRMAVPAGS
VGIGGEQTGIYPAASPGGWQLLGRTDAALFLPQRDPPALLAPGDRIRFVASKVHA

Sequences:

>Translated_215_residues
MQCTIHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFGPQADAQALTALLREAWQESGALI
ADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTAPEYIVYFLGFLPGFAYMGGLDKSLATPRRAEPRMAVPAGS
VGIGGEQTGIYPAASPGGWQLLGRTDAALFLPQRDPPALLAPGDRIRFVASKVHA
>Mature_215_residues
MQCTIHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFGPQADAQALTALLREAWQESGALI
ADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTAPEYIVYFLGFLPGFAYMGGLDKSLATPRRAEPRMAVPAGS
VGIGGEQTGIYPAASPGGWQLLGRTDAALFLPQRDPPALLAPGDRIRFVASKVHA

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=208, Percent_Identity=52.8846153846154, Blast_Score=222, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 22850; Mature: 22850

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCTIHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFGPQA
CCCHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCC
DAQALTALLREAWQESGALIADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTA
CHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHCCC
PEYIVYFLGFLPGFAYMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGWQ
HHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEE
LLGRTDAALFLPQRDPPALLAPGDRIRFVASKVHA
EEECCCEEEEECCCCCCCEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MQCTIHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFGPQA
CCCHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCC
DAQALTALLREAWQESGALIADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTA
CHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHCCC
PEYIVYFLGFLPGFAYMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGWQ
HHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEE
LLGRTDAALFLPQRDPPALLAPGDRIRFVASKVHA
EEECCCEEEEECCCCCCCEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]