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The map label for this gene is 17546827

Identifier: 17546827

GI number: 17546827

Start: 2282177

End: 2283322

Strand: Reverse

Name: 17546827

Synonym: RSc2108

Alternate gene names: NA

Gene position: 2283322-2282177 (Counterclockwise)

Preceding gene: 17546828

Following gene: 17546813

Centisome position: 61.44

GC content: 62.13

Gene sequence:

>1146_bases
ATGAAAATCCGGCTGTTCATCGCACTGGCTTCGTGGGCCGTGGTTACGCCTGCGTTTTCGCAAGGCTCGGTGACCTTGTA
TGGGGTGCTCGACGAAGGGCTCAACTATACGAACAACGTCGGGGGGCACAGCCAAGTCGCGCTCGCCAGCGGATTTCCGC
ATGGCAGTCGATGGGGGCTCAAGGGCGCCGAGGCGATCGGTGGCGGGATCAAAACGATCTTCCAGCTCGAGAACGGGTTC
GACGTTGATAGCGGCCGGGCCTTTCAAGGCGGACTGCTGTTCGGGCGCCAGGCGTACGTGGGCGTGTCCAGTGACACGCT
GGGCGCACTCACCGCTGGCCGCCAGTACGATGCCGTGGTGGACTTCCTGGCACAGAACACCGCCGGCGGTACCTGGGGCG
GATACATGTTCGCGCACCCGTACGATAGCGACAACCTGATCAACACGTTCCGGACCAACAATGCGGTCAAGTACACCAGC
CCGGCACTGGGTGGCCTGAAGTTCGGGGCCACGTACGGCTTCAGTAACGATGTGAAGGCCTCGAACAATCGGCTGTTCAG
CGTTGGGGGCCAATACACCGTTGGCGGATGGCTGCTGTCTGCCGCCTACCTTCAGGCTGACCATCCTTCCGCCACGTCCT
ACGGCGCGATCAACAACGGTGGGGATCAGAACCTGCTCGGCAGCCGGCTGAGGATCGTCGGCGCCGGGGCTACCTATACC
CTGGGCAAGGCGACCTTGGGGCTCGCGTACTCCAATACGGACGTCGGCGACCCTCAAAGCTCGGGCTACGTCGGTCCGAT
CGTCCCGCCGGTGGGGCGGCTGTCTTCGCTCCGCTTCCAGAGTTTCGAGGTCAATGTCAAATATCCGTTTGGCGCGTCGT
ATTGGGTCGGCGCGATGTACACCTATACGCGCGCCAGCTTCAACGCTACGTCCGGAAGGCCGCATCCGACCTACCATTCG
ATCGGGCTGATGGCGGACCACCTGTTGTCGAAGCGGACCGATGTCTACCTGCAAGGGGTGTATCAGCACGCGGGTGGCGA
TACAACCGGTACGGTTCTCGATGTGGCCTATGTGCCCGGTGCCGCGGGGGTCTCATCCAATCGGAATCAGGTGTTGCTTC
GCGCAGGCGTTCGCCATTTTTTCTAG

Upstream 100 bases:

>100_bases
ACGCCGGTGGCGTCGGCCTCGCGGAGCGAACCGCGCCACCAACGTCGCAATCAAGCCGCAACGAAACCATCACGACAAAA
GTCGGTCCCGGGAGACGCAT

Downstream 100 bases:

>100_bases
GGGTGACCCTACACGGTCAATTCCGGTGCTGGGTCAGCGGCAGGCTCAAAACCCACGAAACCCAATGCATCAACAAAATC
GGCGCAAAGCGAATTCAATC

Product: porin signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MKIRLFIALASWAVVTPAFSQGSVTLYGVLDEGLNYTNNVGGHSQVALASGFPHGSRWGLKGAEAIGGGIKTIFQLENGF
DVDSGRAFQGGLLFGRQAYVGVSSDTLGALTAGRQYDAVVDFLAQNTAGGTWGGYMFAHPYDSDNLINTFRTNNAVKYTS
PALGGLKFGATYGFSNDVKASNNRLFSVGGQYTVGGWLLSAAYLQADHPSATSYGAINNGGDQNLLGSRLRIVGAGATYT
LGKATLGLAYSNTDVGDPQSSGYVGPIVPPVGRLSSLRFQSFEVNVKYPFGASYWVGAMYTYTRASFNATSGRPHPTYHS
IGLMADHLLSKRTDVYLQGVYQHAGGDTTGTVLDVAYVPGAAGVSSNRNQVLLRAGVRHFF

Sequences:

>Translated_381_residues
MKIRLFIALASWAVVTPAFSQGSVTLYGVLDEGLNYTNNVGGHSQVALASGFPHGSRWGLKGAEAIGGGIKTIFQLENGF
DVDSGRAFQGGLLFGRQAYVGVSSDTLGALTAGRQYDAVVDFLAQNTAGGTWGGYMFAHPYDSDNLINTFRTNNAVKYTS
PALGGLKFGATYGFSNDVKASNNRLFSVGGQYTVGGWLLSAAYLQADHPSATSYGAINNGGDQNLLGSRLRIVGAGATYT
LGKATLGLAYSNTDVGDPQSSGYVGPIVPPVGRLSSLRFQSFEVNVKYPFGASYWVGAMYTYTRASFNATSGRPHPTYHS
IGLMADHLLSKRTDVYLQGVYQHAGGDTTGTVLDVAYVPGAAGVSSNRNQVLLRAGVRHFF
>Mature_381_residues
MKIRLFIALASWAVVTPAFSQGSVTLYGVLDEGLNYTNNVGGHSQVALASGFPHGSRWGLKGAEAIGGGIKTIFQLENGF
DVDSGRAFQGGLLFGRQAYVGVSSDTLGALTAGRQYDAVVDFLAQNTAGGTWGGYMFAHPYDSDNLINTFRTNNAVKYTS
PALGGLKFGATYGFSNDVKASNNRLFSVGGQYTVGGWLLSAAYLQADHPSATSYGAINNGGDQNLLGSRLRIVGAGATYT
LGKATLGLAYSNTDVGDPQSSGYVGPIVPPVGRLSSLRFQSFEVNVKYPFGASYWVGAMYTYTRASFNATSGRPHPTYHS
IGLMADHLLSKRTDVYLQGVYQHAGGDTTGTVLDVAYVPGAAGVSSNRNQVLLRAGVRHFF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40246; Mature: 40246

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRLFIALASWAVVTPAFSQGSVTLYGVLDEGLNYTNNVGGHSQVALASGFPHGSRWGL
CEEEEEEEEECCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC
KGAEAIGGGIKTIFQLENGFDVDSGRAFQGGLLFGRQAYVGVSSDTLGALTAGRQYDAVV
CCHHHHCCCEEEEEEECCCCCCCCCCEEECCEEECCEEEEEECCCCCHHHHCCCHHHHHH
DFLAQNTAGGTWGGYMFAHPYDSDNLINTFRTNNAVKYTSPALGGLKFGATYGFSNDVKA
HHHHHCCCCCCCCCEEEECCCCCCCCEEHEECCCEEEECCCCCCCEEECEECCCCCCCCC
SNNRLFSVGGQYTVGGWLLSAAYLQADHPSATSYGAINNGGDQNLLGSRLRIVGAGATYT
CCCEEEEECCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
LGKATLGLAYSNTDVGDPQSSGYVGPIVPPVGRLSSLRFQSFEVNVKYPFGASYWVGAMY
ECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEEEECCCCCCHHHHHEE
TYTRASFNATSGRPHPTYHSIGLMADHLLSKRTDVYLQGVYQHAGGDTTGTVLDVAYVPG
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCEEEEEEECCC
AAGVSSNRNQVLLRAGVRHFF
CCCCCCCCCEEEEEHHHHHCC
>Mature Secondary Structure
MKIRLFIALASWAVVTPAFSQGSVTLYGVLDEGLNYTNNVGGHSQVALASGFPHGSRWGL
CEEEEEEEEECCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC
KGAEAIGGGIKTIFQLENGFDVDSGRAFQGGLLFGRQAYVGVSSDTLGALTAGRQYDAVV
CCHHHHCCCEEEEEEECCCCCCCCCCEEECCEEECCEEEEEECCCCCHHHHCCCHHHHHH
DFLAQNTAGGTWGGYMFAHPYDSDNLINTFRTNNAVKYTSPALGGLKFGATYGFSNDVKA
HHHHHCCCCCCCCCEEEECCCCCCCCEEHEECCCEEEECCCCCCCEEECEECCCCCCCCC
SNNRLFSVGGQYTVGGWLLSAAYLQADHPSATSYGAINNGGDQNLLGSRLRIVGAGATYT
CCCEEEEECCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
LGKATLGLAYSNTDVGDPQSSGYVGPIVPPVGRLSSLRFQSFEVNVKYPFGASYWVGAMY
ECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEEEECCCCCCHHHHHEE
TYTRASFNATSGRPHPTYHSIGLMADHLLSKRTDVYLQGVYQHAGGDTTGTVLDVAYVPG
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCEEEEEEECCC
AAGVSSNRNQVLLRAGVRHFF
CCCCCCCCCEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]