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The map label for this gene is 17546797

Identifier: 17546797

GI number: 17546797

Start: 2251927

End: 2252493

Strand: Direct

Name: 17546797

Synonym: RSc2078

Alternate gene names: NA

Gene position: 2251927-2252493 (Clockwise)

Preceding gene: 17546790

Following gene: 17546798

Centisome position: 60.59

GC content: 64.02

Gene sequence:

>567_bases
ATGGCCTCTGAACAGGAACTGTCGGCCTTCCTCCTAAGCGTCGAAAAACGCGCCTTCAAGCAGGCGGTGTTCGCGGTCCG
CGACGACGATGCCGCCCTCGACATCGTCCAGGATGCGATGATCAAGCTGGCCGAGAAGTACGGCGACAAGCCCGAGGCCG
AGCTGCCGCTGCTGTTCCAGCGCATCCTGCAGAACACGATCCACGACTGGTTCCGGCGCACCAAGGTGCGCAACACCTGG
GTCAGCCTGTTCTCCAGCTTCCGCACGGACACCGACGGCGACGACACCGACCCGCTCGAACTGATCGAAAGCGAAGCCGG
CTCCACTGCGGCGGAAAGCAGCGCCGACAAGGTCGAGCGCGCCCAGGTGCTGCAGATCCTGGAGCGCGAAATCGAGAAGC
TGCCGGCACGTCAACGGGAGGCCTTCTTGATGCGTTACTGGGAAGACATGGATGTTGCCGAGACAGCCCAGGCCATGGGC
TGTTCCGAGGGCAGTGTGAAGACGCACTGCTCGCGGGCAACGCACGCCCTCGCGCAAGCGCTCCGGGCGCGAGGAATCCG
ACTATGA

Upstream 100 bases:

>100_bases
TAGCATCGCACCATTTTTGGCGGCTTGACCGCACTGTTCGCGCGCATCAGCCATCACATTTTGCCGCGCAGCACCCCACA
GGATTCGCTCCCGCCGTTGT

Downstream 100 bases:

>100_bases
ACCCAGCAGAACTCCGAGAACGCCGCTTCGCGTACGCCGTCCACACCGCTCTGAACGAGTCGGCGGGACAGTTGCCGCCC
GATGTCCGCGACCGCCTGGC

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPEAELPLLFQRILQNTIHDWFRRTKVRNTW
VSLFSSFRTDTDGDDTDPLELIESEAGSTAAESSADKVERAQVLQILEREIEKLPARQREAFLMRYWEDMDVAETAQAMG
CSEGSVKTHCSRATHALAQALRARGIRL

Sequences:

>Translated_188_residues
MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPEAELPLLFQRILQNTIHDWFRRTKVRNTW
VSLFSSFRTDTDGDDTDPLELIESEAGSTAAESSADKVERAQVLQILEREIEKLPARQREAFLMRYWEDMDVAETAQAMG
CSEGSVKTHCSRATHALAQALRARGIRL
>Mature_187_residues
ASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPEAELPLLFQRILQNTIHDWFRRTKVRNTWV
SLFSSFRTDTDGDDTDPLELIESEAGSTAAESSADKVERAQVLQILEREIEKLPARQREAFLMRYWEDMDVAETAQAMGC
SEGSVKTHCSRATHALAQALRARGIRL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21264; Mature: 21133

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPEAELPLLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RILQNTIHDWFRRTKVRNTWVSLFSSFRTDTDGDDTDPLELIESEAGSTAAESSADKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
AQVLQILEREIEKLPARQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHALAQA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRARGIRL
HHHCCCCC
>Mature Secondary Structure 
ASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPEAELPLLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RILQNTIHDWFRRTKVRNTWVSLFSSFRTDTDGDDTDPLELIESEAGSTAAESSADKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
AQVLQILEREIEKLPARQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHALAQA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRARGIRL
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA